Summary functions for MAF file

stat_maf_column() takes a maf file and filters a MAF dataframe by retaining only the rows with a column value included in the values list

Usage

stat_maf_sample(maf, column = "Tumor_Sample_Barcode", ...)

Arguments

maf

a maf as dataframe

column

a schema of datafrane check Select::TCGA_maf_schema for example

...

Other options

Value

filtered_maf a filtered maf file