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Count mutations per sample in a MAF file

Source: R/gam_utils.r
stat_maf_sample.Rd

Count mutations per sample in a MAF file

Usage

stat_maf_sample(maf, column = "Tumor_Sample_Barcode", ...)

Arguments

maf

A MAF dataframe

column

Column name containing sample IDs

...

Additional arguments passed to stat_maf_column

Value

Table of mutation counts per sample.

Examples

data(luad_maf, package = "SelectSim")
head(stat_maf_sample(luad_maf))
#> v
#> TCGA-05-4244-01A-01D-1105-08 TCGA-05-4249-01A-01D-1105-08 
#>                          270                          413 
#> TCGA-05-4250-01A-01D-1105-08 TCGA-05-4382-01A-01D-1931-08 
#>                          461                         2155 
#> TCGA-05-4384-01A-01D-1753-08 TCGA-05-4389-01A-01D-1265-08 
#>                          174                          305