Skip to contents

Count mutations per gene in a MAF file

Source: R/gam_utils.r
stat_maf_gene.Rd

Count mutations per gene in a MAF file

Usage

stat_maf_gene(maf, column = "Hugo_Symbol", ...)

Arguments

maf

A MAF dataframe

column

Column name containing gene symbols

...

Additional arguments passed to stat_maf_column

Value

Table of mutation counts per gene.

Examples

data(luad_maf, package = "SelectSim")
head(stat_maf_gene(luad_maf))
#> v
#>    A1BG    A1CF     A2M   A2ML1 A3GALT2  A4GALT 
#>      17      20      26      36       1       1