Generating the null_simulation matrix

Generating the null_simulation matrix

Usage

null_model_parallel(al, temp_mat, W, n.cores = 1, n.permut, seed = 42)

Arguments

al

Alteration landscape object

temp_mat

template matrices

W

weight matrix

n.cores

Number of cores

n.permut

Number of simulations

seed

Random seed

Value

List of simulated binary matrices (one per permutation)

Examples

# \donttest{
data(luad_run_data, package = "SelectSim")
al       <- new.AL.general(luad_run_data$M,
                           feat.covariates  = luad_run_data$alteration.class,
                           sample.covariates = luad_run_data$sample.class,
                           min.freq = 10)
temp_obj <- template.obj.gen(al)
W        <- generateW_block(al, lambda = 0.3, tau = 1)
sims     <- null_model_parallel(al, temp_obj$temp_mat, W$W,
                                n.cores = 1, n.permut = 10)
length(sims)
#> [1] 10
# }