Pre-processed TCGA LUAD data ready to pass directly to selectX().
Usage
data(luad_run_data)Format
A named list with four elements:
- M
A named list containing:
- M
A named list of binary alteration matrices (genes x samples), one per alteration type (e.g.,
missense,truncating).- tmb
A named list of data frames, one per alteration type, each with columns
sample(character) andmutation(integer TMB count).
- sample.class
Named character vector of sample-type annotations (length = number of samples). Names are sample IDs.
- alteration.class
Named character vector of alteration-type annotations (length = number of genes). Names are gene symbols.