Result of LUAD generated by SelectSim with SelectSim run done at min.freq=10.
Usage
data(luad_result)Examples
data(luad_result)
dim(luad_result)
#> [1] 253 22
head(luad_result)
#> SFE_1 SFE_2 name support_1 support_2 freq_1 freq_2
#> KRAS - TP53 KRAS TP53 KRAS - TP53 154 221 0.30677291 0.4402390
#> EGFR - KRAS EGFR KRAS EGFR - KRAS 57 154 0.11354582 0.3067729
#> STK11 - TP53 STK11 TP53 STK11 - TP53 59 221 0.11752988 0.4402390
#> BRAF - KRAS BRAF KRAS BRAF - KRAS 35 154 0.06972112 0.3067729
#> KRAS - STK11 KRAS STK11 KRAS - STK11 154 59 0.30677291 0.1175299
#> EGFR - TP53 EGFR TP53 EGFR - TP53 57 221 0.11354582 0.4402390
#> overlap w_overlap max_overlap freq_overlap r_overlap w_r_overlap
#> KRAS - TP53 49 35.8760174 154 0.31818182 98.63545 58.47438
#> EGFR - KRAS 0 0.0000000 57 0.00000000 31.23746 16.91865
#> STK11 - TP53 13 9.5456386 59 0.22033898 38.97882 22.40677
#> BRAF - KRAS 2 0.9821429 35 0.05714286 19.41137 10.41048
#> KRAS - STK11 28 25.9230769 59 0.47457627 32.38016 17.43253
#> EGFR - TP53 32 29.3335097 57 0.56140351 37.53623 21.67706
#> wES wFDR nES mean_r_nES nFDR cum_freq
#> KRAS - TP53 -15.979458 0.000000000 -13.985761 -1.9936978 0.0000000000 375
#> EGFR - KRAS -11.963290 0.000000000 -10.707528 -1.2557624 0.0000000000 211
#> STK11 - TP53 -9.094190 0.000000000 -7.750181 -1.3440086 0.0000000000 280
#> BRAF - KRAS -6.666841 0.002787068 -5.688806 -0.9780349 0.0002787068 189
#> KRAS - STK11 6.003722 0.004905240 4.765036 1.2386861 0.0017837235 213
#> EGFR - TP53 5.413925 0.005574136 4.159880 1.2540444 0.0040876997 278
#> nFDR2 type FDR
#> KRAS - TP53 0.0000000000 ME TRUE
#> EGFR - KRAS 0.0000000000 ME TRUE
#> STK11 - TP53 0.0000000000 ME TRUE
#> BRAF - KRAS 0.0002787068 ME TRUE
#> KRAS - STK11 0.0017837235 CO TRUE
#> EGFR - TP53 0.0040876997 CO TRUE