Computes a sample weight matrix that accounts for sample-class covariates
(blocks). Within each block the reference TMB is the block median; the
overall reference used by generateW_mean_tmb is the mean of those
block medians.
Value
List with W_block (per-block weight matrices), W (full
concatenated weight matrix), W_median (per-block median TMBs), and
mean_TMB (mean of block medians).
Examples
# \donttest{
data(luad_run_data, package = "SelectSim")
al <- new.AL.general(luad_run_data$M,
feat.covariates = luad_run_data$alteration.class,
sample.covariates = luad_run_data$sample.class,
min.freq = 10)
generateW_block(al, lambda = 0.3, tau = 1)
#> $W_block
#> $W_block$LUAD
#> TCGA-05-4244-01 TCGA-05-4249-01 TCGA-05-4250-01 TCGA-05-4382-01
#> ARID1A 1 0.7692308 0.7692308 0.3225806
#> ATM 1 0.7692308 0.7692308 0.3225806
#> BRAF 1 0.7692308 0.7692308 0.3225806
#> CDKN2A 1 0.7692308 0.7692308 0.3225806
#> CMTR2 1 0.7692308 0.7692308 0.3225806
#> CTNNB1 1 0.7692308 0.7692308 0.3225806
#> EGFR 1 0.7692308 0.7692308 0.3225806
#> KEAP1 1 0.7692308 0.7692308 0.3225806
#> KRAS 1 0.7692308 0.7692308 0.3225806
#> MGA 1 0.7692308 0.7692308 0.3225806
#> NF1 1 0.7692308 0.7692308 0.3225806
#> PIK3CA 1 0.7692308 0.7692308 0.3225806
#> PTPRD 1 0.7692308 0.7692308 0.3225806
#> PTPRT 1 0.7692308 0.7692308 0.3225806
#> RB1 1 0.7692308 0.7692308 0.3225806
#> RBM10 1 0.7692308 0.7692308 0.3225806
#> SETBP1 1 0.7692308 0.7692308 0.3225806
#> SETD2 1 0.7692308 0.7692308 0.3225806
#> SMAD4 1 0.7692308 0.7692308 0.3225806
#> SMARCA4 1 0.7692308 0.7692308 0.3225806
#> STK11 1 0.7692308 0.7692308 0.3225806
#> TP53 1 0.7692308 0.7692308 0.3225806
#> U2AF1 1 0.7692308 0.7692308 0.3225806
#> TCGA-05-4384-01 TCGA-05-4389-01 TCGA-05-4390-01 TCGA-05-4395-01
#> ARID1A 1 0.7692308 0.625 0.7692308
#> ATM 1 0.7692308 0.625 0.7692308
#> BRAF 1 0.7692308 0.625 0.7692308
#> CDKN2A 1 0.7692308 0.625 0.7692308
#> CMTR2 1 0.7692308 0.625 0.7692308
#> CTNNB1 1 0.7692308 0.625 0.7692308
#> EGFR 1 0.7692308 0.625 0.7692308
#> KEAP1 1 0.7692308 0.625 0.7692308
#> KRAS 1 0.7692308 0.625 0.7692308
#> MGA 1 0.7692308 0.625 0.7692308
#> NF1 1 0.7692308 0.625 0.7692308
#> PIK3CA 1 0.7692308 0.625 0.7692308
#> PTPRD 1 0.7692308 0.625 0.7692308
#> PTPRT 1 0.7692308 0.625 0.7692308
#> RB1 1 0.7692308 0.625 0.7692308
#> RBM10 1 0.7692308 0.625 0.7692308
#> SETBP1 1 0.7692308 0.625 0.7692308
#> SETD2 1 0.7692308 0.625 0.7692308
#> SMAD4 1 0.7692308 0.625 0.7692308
#> SMARCA4 1 0.7692308 0.625 0.7692308
#> STK11 1 0.7692308 0.625 0.7692308
#> TP53 1 0.7692308 0.625 0.7692308
#> U2AF1 1 0.7692308 0.625 0.7692308
#> TCGA-05-4396-01 TCGA-05-4397-01 TCGA-05-4403-01 TCGA-05-4405-01
#> ARID1A 0.3571429 0.5263158 1 0.7692308
#> ATM 0.3571429 0.5263158 1 0.7692308
#> BRAF 0.3571429 0.5263158 1 0.7692308
#> CDKN2A 0.3571429 0.5263158 1 0.7692308
#> CMTR2 0.3571429 0.5263158 1 0.7692308
#> CTNNB1 0.3571429 0.5263158 1 0.7692308
#> EGFR 0.3571429 0.5263158 1 0.7692308
#> KEAP1 0.3571429 0.5263158 1 0.7692308
#> KRAS 0.3571429 0.5263158 1 0.7692308
#> MGA 0.3571429 0.5263158 1 0.7692308
#> NF1 0.3571429 0.5263158 1 0.7692308
#> PIK3CA 0.3571429 0.5263158 1 0.7692308
#> PTPRD 0.3571429 0.5263158 1 0.7692308
#> PTPRT 0.3571429 0.5263158 1 0.7692308
#> RB1 0.3571429 0.5263158 1 0.7692308
#> RBM10 0.3571429 0.5263158 1 0.7692308
#> SETBP1 0.3571429 0.5263158 1 0.7692308
#> SETD2 0.3571429 0.5263158 1 0.7692308
#> SMAD4 0.3571429 0.5263158 1 0.7692308
#> SMARCA4 0.3571429 0.5263158 1 0.7692308
#> STK11 0.3571429 0.5263158 1 0.7692308
#> TP53 0.3571429 0.5263158 1 0.7692308
#> U2AF1 0.3571429 0.5263158 1 0.7692308
#> TCGA-05-4410-01 TCGA-05-4415-01 TCGA-05-4417-01 TCGA-05-4418-01
#> ARID1A 0.4 1 0.7692308 0.7692308
#> ATM 0.4 1 0.7692308 0.7692308
#> BRAF 0.4 1 0.7692308 0.7692308
#> CDKN2A 0.4 1 0.7692308 0.7692308
#> CMTR2 0.4 1 0.7692308 0.7692308
#> CTNNB1 0.4 1 0.7692308 0.7692308
#> EGFR 0.4 1 0.7692308 0.7692308
#> KEAP1 0.4 1 0.7692308 0.7692308
#> KRAS 0.4 1 0.7692308 0.7692308
#> MGA 0.4 1 0.7692308 0.7692308
#> NF1 0.4 1 0.7692308 0.7692308
#> PIK3CA 0.4 1 0.7692308 0.7692308
#> PTPRD 0.4 1 0.7692308 0.7692308
#> PTPRT 0.4 1 0.7692308 0.7692308
#> RB1 0.4 1 0.7692308 0.7692308
#> RBM10 0.4 1 0.7692308 0.7692308
#> SETBP1 0.4 1 0.7692308 0.7692308
#> SETD2 0.4 1 0.7692308 0.7692308
#> SMAD4 0.4 1 0.7692308 0.7692308
#> SMARCA4 0.4 1 0.7692308 0.7692308
#> STK11 0.4 1 0.7692308 0.7692308
#> TP53 0.4 1 0.7692308 0.7692308
#> U2AF1 0.4 1 0.7692308 0.7692308
#> TCGA-05-4420-01 TCGA-05-4422-01 TCGA-05-4425-01 TCGA-05-4427-01
#> ARID1A 0.7692308 1 1 0.4545455
#> ATM 0.7692308 1 1 0.4545455
#> BRAF 0.7692308 1 1 0.4545455
#> CDKN2A 0.7692308 1 1 0.4545455
#> CMTR2 0.7692308 1 1 0.4545455
#> CTNNB1 0.7692308 1 1 0.4545455
#> EGFR 0.7692308 1 1 0.4545455
#> KEAP1 0.7692308 1 1 0.4545455
#> KRAS 0.7692308 1 1 0.4545455
#> MGA 0.7692308 1 1 0.4545455
#> NF1 0.7692308 1 1 0.4545455
#> PIK3CA 0.7692308 1 1 0.4545455
#> PTPRD 0.7692308 1 1 0.4545455
#> PTPRT 0.7692308 1 1 0.4545455
#> RB1 0.7692308 1 1 0.4545455
#> RBM10 0.7692308 1 1 0.4545455
#> SETBP1 0.7692308 1 1 0.4545455
#> SETD2 0.7692308 1 1 0.4545455
#> SMAD4 0.7692308 1 1 0.4545455
#> SMARCA4 0.7692308 1 1 0.4545455
#> STK11 0.7692308 1 1 0.4545455
#> TP53 0.7692308 1 1 0.4545455
#> U2AF1 0.7692308 1 1 0.4545455
#> TCGA-05-4430-01 TCGA-05-4432-01 TCGA-05-4433-01 TCGA-05-5423-01
#> ARID1A 0.7692308 0.625 1 1
#> ATM 0.7692308 0.625 1 1
#> BRAF 0.7692308 0.625 1 1
#> CDKN2A 0.7692308 0.625 1 1
#> CMTR2 0.7692308 0.625 1 1
#> CTNNB1 0.7692308 0.625 1 1
#> EGFR 0.7692308 0.625 1 1
#> KEAP1 0.7692308 0.625 1 1
#> KRAS 0.7692308 0.625 1 1
#> MGA 0.7692308 0.625 1 1
#> NF1 0.7692308 0.625 1 1
#> PIK3CA 0.7692308 0.625 1 1
#> PTPRD 0.7692308 0.625 1 1
#> PTPRT 0.7692308 0.625 1 1
#> RB1 0.7692308 0.625 1 1
#> RBM10 0.7692308 0.625 1 1
#> SETBP1 0.7692308 0.625 1 1
#> SETD2 0.7692308 0.625 1 1
#> SMAD4 0.7692308 0.625 1 1
#> SMARCA4 0.7692308 0.625 1 1
#> STK11 0.7692308 0.625 1 1
#> TP53 0.7692308 0.625 1 1
#> U2AF1 0.7692308 0.625 1 1
#> TCGA-05-5425-01 TCGA-05-5428-01 TCGA-05-5429-01 TCGA-35-3615-01
#> ARID1A 0.625 0.7692308 1 1
#> ATM 0.625 0.7692308 1 1
#> BRAF 0.625 0.7692308 1 1
#> CDKN2A 0.625 0.7692308 1 1
#> CMTR2 0.625 0.7692308 1 1
#> CTNNB1 0.625 0.7692308 1 1
#> EGFR 0.625 0.7692308 1 1
#> KEAP1 0.625 0.7692308 1 1
#> KRAS 0.625 0.7692308 1 1
#> MGA 0.625 0.7692308 1 1
#> NF1 0.625 0.7692308 1 1
#> PIK3CA 0.625 0.7692308 1 1
#> PTPRD 0.625 0.7692308 1 1
#> PTPRT 0.625 0.7692308 1 1
#> RB1 0.625 0.7692308 1 1
#> RBM10 0.625 0.7692308 1 1
#> SETBP1 0.625 0.7692308 1 1
#> SETD2 0.625 0.7692308 1 1
#> SMAD4 0.625 0.7692308 1 1
#> SMARCA4 0.625 0.7692308 1 1
#> STK11 0.625 0.7692308 1 1
#> TP53 0.625 0.7692308 1 1
#> U2AF1 0.625 0.7692308 1 1
#> TCGA-35-4122-01 TCGA-35-4123-01 TCGA-35-5375-01 TCGA-38-4625-01
#> ARID1A 0.7692308 0.7692308 0.7692308 0.625
#> ATM 0.7692308 0.7692308 0.7692308 0.625
#> BRAF 0.7692308 0.7692308 0.7692308 0.625
#> CDKN2A 0.7692308 0.7692308 0.7692308 0.625
#> CMTR2 0.7692308 0.7692308 0.7692308 0.625
#> CTNNB1 0.7692308 0.7692308 0.7692308 0.625
#> EGFR 0.7692308 0.7692308 0.7692308 0.625
#> KEAP1 0.7692308 0.7692308 0.7692308 0.625
#> KRAS 0.7692308 0.7692308 0.7692308 0.625
#> MGA 0.7692308 0.7692308 0.7692308 0.625
#> NF1 0.7692308 0.7692308 0.7692308 0.625
#> PIK3CA 0.7692308 0.7692308 0.7692308 0.625
#> PTPRD 0.7692308 0.7692308 0.7692308 0.625
#> PTPRT 0.7692308 0.7692308 0.7692308 0.625
#> RB1 0.7692308 0.7692308 0.7692308 0.625
#> RBM10 0.7692308 0.7692308 0.7692308 0.625
#> SETBP1 0.7692308 0.7692308 0.7692308 0.625
#> SETD2 0.7692308 0.7692308 0.7692308 0.625
#> SMAD4 0.7692308 0.7692308 0.7692308 0.625
#> SMARCA4 0.7692308 0.7692308 0.7692308 0.625
#> STK11 0.7692308 0.7692308 0.7692308 0.625
#> TP53 0.7692308 0.7692308 0.7692308 0.625
#> U2AF1 0.7692308 0.7692308 0.7692308 0.625
#> TCGA-38-4627-01 TCGA-38-4631-01 TCGA-38-4632-01 TCGA-38-6178-01
#> ARID1A 1 0.5263158 0.625 1
#> ATM 1 0.5263158 0.625 1
#> BRAF 1 0.5263158 0.625 1
#> CDKN2A 1 0.5263158 0.625 1
#> CMTR2 1 0.5263158 0.625 1
#> CTNNB1 1 0.5263158 0.625 1
#> EGFR 1 0.5263158 0.625 1
#> KEAP1 1 0.5263158 0.625 1
#> KRAS 1 0.5263158 0.625 1
#> MGA 1 0.5263158 0.625 1
#> NF1 1 0.5263158 0.625 1
#> PIK3CA 1 0.5263158 0.625 1
#> PTPRD 1 0.5263158 0.625 1
#> PTPRT 1 0.5263158 0.625 1
#> RB1 1 0.5263158 0.625 1
#> RBM10 1 0.5263158 0.625 1
#> SETBP1 1 0.5263158 0.625 1
#> SETD2 1 0.5263158 0.625 1
#> SMAD4 1 0.5263158 0.625 1
#> SMARCA4 1 0.5263158 0.625 1
#> STK11 1 0.5263158 0.625 1
#> TP53 1 0.5263158 0.625 1
#> U2AF1 1 0.5263158 0.625 1
#> TCGA-44-2656-01 TCGA-44-2657-01 TCGA-44-2662-01 TCGA-44-2665-01
#> ARID1A 0.5263158 0.7692308 1 1
#> ATM 0.5263158 0.7692308 1 1
#> BRAF 0.5263158 0.7692308 1 1
#> CDKN2A 0.5263158 0.7692308 1 1
#> CMTR2 0.5263158 0.7692308 1 1
#> CTNNB1 0.5263158 0.7692308 1 1
#> EGFR 0.5263158 0.7692308 1 1
#> KEAP1 0.5263158 0.7692308 1 1
#> KRAS 0.5263158 0.7692308 1 1
#> MGA 0.5263158 0.7692308 1 1
#> NF1 0.5263158 0.7692308 1 1
#> PIK3CA 0.5263158 0.7692308 1 1
#> PTPRD 0.5263158 0.7692308 1 1
#> PTPRT 0.5263158 0.7692308 1 1
#> RB1 0.5263158 0.7692308 1 1
#> RBM10 0.5263158 0.7692308 1 1
#> SETBP1 0.5263158 0.7692308 1 1
#> SETD2 0.5263158 0.7692308 1 1
#> SMAD4 0.5263158 0.7692308 1 1
#> SMARCA4 0.5263158 0.7692308 1 1
#> STK11 0.5263158 0.7692308 1 1
#> TP53 0.5263158 0.7692308 1 1
#> U2AF1 0.5263158 0.7692308 1 1
#> TCGA-44-2666-01 TCGA-44-2668-01 TCGA-44-3396-01 TCGA-44-5643-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-44-5645-01 TCGA-44-6145-01 TCGA-44-6146-01 TCGA-44-6774-01
#> ARID1A 1 0.7692308 1 0.7692308
#> ATM 1 0.7692308 1 0.7692308
#> BRAF 1 0.7692308 1 0.7692308
#> CDKN2A 1 0.7692308 1 0.7692308
#> CMTR2 1 0.7692308 1 0.7692308
#> CTNNB1 1 0.7692308 1 0.7692308
#> EGFR 1 0.7692308 1 0.7692308
#> KEAP1 1 0.7692308 1 0.7692308
#> KRAS 1 0.7692308 1 0.7692308
#> MGA 1 0.7692308 1 0.7692308
#> NF1 1 0.7692308 1 0.7692308
#> PIK3CA 1 0.7692308 1 0.7692308
#> PTPRD 1 0.7692308 1 0.7692308
#> PTPRT 1 0.7692308 1 0.7692308
#> RB1 1 0.7692308 1 0.7692308
#> RBM10 1 0.7692308 1 0.7692308
#> SETBP1 1 0.7692308 1 0.7692308
#> SETD2 1 0.7692308 1 0.7692308
#> SMAD4 1 0.7692308 1 0.7692308
#> SMARCA4 1 0.7692308 1 0.7692308
#> STK11 1 0.7692308 1 0.7692308
#> TP53 1 0.7692308 1 0.7692308
#> U2AF1 1 0.7692308 1 0.7692308
#> TCGA-44-6775-01 TCGA-44-6776-01 TCGA-44-6777-01 TCGA-44-7659-01
#> ARID1A 1 1 0.7692308 1
#> ATM 1 1 0.7692308 1
#> BRAF 1 1 0.7692308 1
#> CDKN2A 1 1 0.7692308 1
#> CMTR2 1 1 0.7692308 1
#> CTNNB1 1 1 0.7692308 1
#> EGFR 1 1 0.7692308 1
#> KEAP1 1 1 0.7692308 1
#> KRAS 1 1 0.7692308 1
#> MGA 1 1 0.7692308 1
#> NF1 1 1 0.7692308 1
#> PIK3CA 1 1 0.7692308 1
#> PTPRD 1 1 0.7692308 1
#> PTPRT 1 1 0.7692308 1
#> RB1 1 1 0.7692308 1
#> RBM10 1 1 0.7692308 1
#> SETBP1 1 1 0.7692308 1
#> SETD2 1 1 0.7692308 1
#> SMAD4 1 1 0.7692308 1
#> SMARCA4 1 1 0.7692308 1
#> STK11 1 1 0.7692308 1
#> TP53 1 1 0.7692308 1
#> U2AF1 1 1 0.7692308 1
#> TCGA-44-7661-01 TCGA-44-7662-01 TCGA-44-7670-01 TCGA-44-7671-01
#> ARID1A 0.7692308 0.625 0.4 0.7692308
#> ATM 0.7692308 0.625 0.4 0.7692308
#> BRAF 0.7692308 0.625 0.4 0.7692308
#> CDKN2A 0.7692308 0.625 0.4 0.7692308
#> CMTR2 0.7692308 0.625 0.4 0.7692308
#> CTNNB1 0.7692308 0.625 0.4 0.7692308
#> EGFR 0.7692308 0.625 0.4 0.7692308
#> KEAP1 0.7692308 0.625 0.4 0.7692308
#> KRAS 0.7692308 0.625 0.4 0.7692308
#> MGA 0.7692308 0.625 0.4 0.7692308
#> NF1 0.7692308 0.625 0.4 0.7692308
#> PIK3CA 0.7692308 0.625 0.4 0.7692308
#> PTPRD 0.7692308 0.625 0.4 0.7692308
#> PTPRT 0.7692308 0.625 0.4 0.7692308
#> RB1 0.7692308 0.625 0.4 0.7692308
#> RBM10 0.7692308 0.625 0.4 0.7692308
#> SETBP1 0.7692308 0.625 0.4 0.7692308
#> SETD2 0.7692308 0.625 0.4 0.7692308
#> SMAD4 0.7692308 0.625 0.4 0.7692308
#> SMARCA4 0.7692308 0.625 0.4 0.7692308
#> STK11 0.7692308 0.625 0.4 0.7692308
#> TP53 0.7692308 0.625 0.4 0.7692308
#> U2AF1 0.7692308 0.625 0.4 0.7692308
#> TCGA-44-7672-01 TCGA-44-8117-01 TCGA-44-8119-01 TCGA-44-8120-01
#> ARID1A 1 0.5263158 0.625 0.625
#> ATM 1 0.5263158 0.625 0.625
#> BRAF 1 0.5263158 0.625 0.625
#> CDKN2A 1 0.5263158 0.625 0.625
#> CMTR2 1 0.5263158 0.625 0.625
#> CTNNB1 1 0.5263158 0.625 0.625
#> EGFR 1 0.5263158 0.625 0.625
#> KEAP1 1 0.5263158 0.625 0.625
#> KRAS 1 0.5263158 0.625 0.625
#> MGA 1 0.5263158 0.625 0.625
#> NF1 1 0.5263158 0.625 0.625
#> PIK3CA 1 0.5263158 0.625 0.625
#> PTPRD 1 0.5263158 0.625 0.625
#> PTPRT 1 0.5263158 0.625 0.625
#> RB1 1 0.5263158 0.625 0.625
#> RBM10 1 0.5263158 0.625 0.625
#> SETBP1 1 0.5263158 0.625 0.625
#> SETD2 1 0.5263158 0.625 0.625
#> SMAD4 1 0.5263158 0.625 0.625
#> SMARCA4 1 0.5263158 0.625 0.625
#> STK11 1 0.5263158 0.625 0.625
#> TP53 1 0.5263158 0.625 0.625
#> U2AF1 1 0.5263158 0.625 0.625
#> TCGA-44-A47A-01 TCGA-44-A47G-01 TCGA-44-A4SS-01 TCGA-44-A4SU-01
#> ARID1A 0.7692308 1 0.625 1
#> ATM 0.7692308 1 0.625 1
#> BRAF 0.7692308 1 0.625 1
#> CDKN2A 0.7692308 1 0.625 1
#> CMTR2 0.7692308 1 0.625 1
#> CTNNB1 0.7692308 1 0.625 1
#> EGFR 0.7692308 1 0.625 1
#> KEAP1 0.7692308 1 0.625 1
#> KRAS 0.7692308 1 0.625 1
#> MGA 0.7692308 1 0.625 1
#> NF1 0.7692308 1 0.625 1
#> PIK3CA 0.7692308 1 0.625 1
#> PTPRD 0.7692308 1 0.625 1
#> PTPRT 0.7692308 1 0.625 1
#> RB1 0.7692308 1 0.625 1
#> RBM10 0.7692308 1 0.625 1
#> SETBP1 0.7692308 1 0.625 1
#> SETD2 0.7692308 1 0.625 1
#> SMAD4 0.7692308 1 0.625 1
#> SMARCA4 0.7692308 1 0.625 1
#> STK11 0.7692308 1 0.625 1
#> TP53 0.7692308 1 0.625 1
#> U2AF1 0.7692308 1 0.625 1
#> TCGA-49-4486-01 TCGA-49-4488-01 TCGA-49-4490-01 TCGA-49-4494-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-49-4505-01 TCGA-49-4506-01 TCGA-49-4507-01 TCGA-49-4510-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-49-4514-01 TCGA-49-6744-01 TCGA-49-6745-01 TCGA-49-AAQV-01
#> ARID1A 0.7692308 0.7692308 1 1
#> ATM 0.7692308 0.7692308 1 1
#> BRAF 0.7692308 0.7692308 1 1
#> CDKN2A 0.7692308 0.7692308 1 1
#> CMTR2 0.7692308 0.7692308 1 1
#> CTNNB1 0.7692308 0.7692308 1 1
#> EGFR 0.7692308 0.7692308 1 1
#> KEAP1 0.7692308 0.7692308 1 1
#> KRAS 0.7692308 0.7692308 1 1
#> MGA 0.7692308 0.7692308 1 1
#> NF1 0.7692308 0.7692308 1 1
#> PIK3CA 0.7692308 0.7692308 1 1
#> PTPRD 0.7692308 0.7692308 1 1
#> PTPRT 0.7692308 0.7692308 1 1
#> RB1 0.7692308 0.7692308 1 1
#> RBM10 0.7692308 0.7692308 1 1
#> SETBP1 0.7692308 0.7692308 1 1
#> SETD2 0.7692308 0.7692308 1 1
#> SMAD4 0.7692308 0.7692308 1 1
#> SMARCA4 0.7692308 0.7692308 1 1
#> STK11 0.7692308 0.7692308 1 1
#> TP53 0.7692308 0.7692308 1 1
#> U2AF1 0.7692308 0.7692308 1 1
#> TCGA-49-AAR9-01 TCGA-49-AARE-01 TCGA-49-AARN-01 TCGA-49-AARO-01
#> ARID1A 0.625 0.3571429 0.5263158 0.625
#> ATM 0.625 0.3571429 0.5263158 0.625
#> BRAF 0.625 0.3571429 0.5263158 0.625
#> CDKN2A 0.625 0.3571429 0.5263158 0.625
#> CMTR2 0.625 0.3571429 0.5263158 0.625
#> CTNNB1 0.625 0.3571429 0.5263158 0.625
#> EGFR 0.625 0.3571429 0.5263158 0.625
#> KEAP1 0.625 0.3571429 0.5263158 0.625
#> KRAS 0.625 0.3571429 0.5263158 0.625
#> MGA 0.625 0.3571429 0.5263158 0.625
#> NF1 0.625 0.3571429 0.5263158 0.625
#> PIK3CA 0.625 0.3571429 0.5263158 0.625
#> PTPRD 0.625 0.3571429 0.5263158 0.625
#> PTPRT 0.625 0.3571429 0.5263158 0.625
#> RB1 0.625 0.3571429 0.5263158 0.625
#> RBM10 0.625 0.3571429 0.5263158 0.625
#> SETBP1 0.625 0.3571429 0.5263158 0.625
#> SETD2 0.625 0.3571429 0.5263158 0.625
#> SMAD4 0.625 0.3571429 0.5263158 0.625
#> SMARCA4 0.625 0.3571429 0.5263158 0.625
#> STK11 0.625 0.3571429 0.5263158 0.625
#> TP53 0.625 0.3571429 0.5263158 0.625
#> U2AF1 0.625 0.3571429 0.5263158 0.625
#> TCGA-49-AARQ-01 TCGA-4B-A93V-01 TCGA-50-5044-01 TCGA-50-5051-01
#> ARID1A 0.5263158 1 1 1
#> ATM 0.5263158 1 1 1
#> BRAF 0.5263158 1 1 1
#> CDKN2A 0.5263158 1 1 1
#> CMTR2 0.5263158 1 1 1
#> CTNNB1 0.5263158 1 1 1
#> EGFR 0.5263158 1 1 1
#> KEAP1 0.5263158 1 1 1
#> KRAS 0.5263158 1 1 1
#> MGA 0.5263158 1 1 1
#> NF1 0.5263158 1 1 1
#> PIK3CA 0.5263158 1 1 1
#> PTPRD 0.5263158 1 1 1
#> PTPRT 0.5263158 1 1 1
#> RB1 0.5263158 1 1 1
#> RBM10 0.5263158 1 1 1
#> SETBP1 0.5263158 1 1 1
#> SETD2 0.5263158 1 1 1
#> SMAD4 0.5263158 1 1 1
#> SMARCA4 0.5263158 1 1 1
#> STK11 0.5263158 1 1 1
#> TP53 0.5263158 1 1 1
#> U2AF1 0.5263158 1 1 1
#> TCGA-50-5066-01 TCGA-50-5068-01 TCGA-50-5930-01 TCGA-50-5932-01
#> ARID1A 0.7692308 1 0.4 1
#> ATM 0.7692308 1 0.4 1
#> BRAF 0.7692308 1 0.4 1
#> CDKN2A 0.7692308 1 0.4 1
#> CMTR2 0.7692308 1 0.4 1
#> CTNNB1 0.7692308 1 0.4 1
#> EGFR 0.7692308 1 0.4 1
#> KEAP1 0.7692308 1 0.4 1
#> KRAS 0.7692308 1 0.4 1
#> MGA 0.7692308 1 0.4 1
#> NF1 0.7692308 1 0.4 1
#> PIK3CA 0.7692308 1 0.4 1
#> PTPRD 0.7692308 1 0.4 1
#> PTPRT 0.7692308 1 0.4 1
#> RB1 0.7692308 1 0.4 1
#> RBM10 0.7692308 1 0.4 1
#> SETBP1 0.7692308 1 0.4 1
#> SETD2 0.7692308 1 0.4 1
#> SMAD4 0.7692308 1 0.4 1
#> SMARCA4 0.7692308 1 0.4 1
#> STK11 0.7692308 1 0.4 1
#> TP53 0.7692308 1 0.4 1
#> U2AF1 0.7692308 1 0.4 1
#> TCGA-50-5933-01 TCGA-50-5936-01 TCGA-50-5939-01 TCGA-50-5941-01
#> ARID1A 0.625 1 1 0.7692308
#> ATM 0.625 1 1 0.7692308
#> BRAF 0.625 1 1 0.7692308
#> CDKN2A 0.625 1 1 0.7692308
#> CMTR2 0.625 1 1 0.7692308
#> CTNNB1 0.625 1 1 0.7692308
#> EGFR 0.625 1 1 0.7692308
#> KEAP1 0.625 1 1 0.7692308
#> KRAS 0.625 1 1 0.7692308
#> MGA 0.625 1 1 0.7692308
#> NF1 0.625 1 1 0.7692308
#> PIK3CA 0.625 1 1 0.7692308
#> PTPRD 0.625 1 1 0.7692308
#> PTPRT 0.625 1 1 0.7692308
#> RB1 0.625 1 1 0.7692308
#> RBM10 0.625 1 1 0.7692308
#> SETBP1 0.625 1 1 0.7692308
#> SETD2 0.625 1 1 0.7692308
#> SMAD4 0.625 1 1 0.7692308
#> SMARCA4 0.625 1 1 0.7692308
#> STK11 0.625 1 1 0.7692308
#> TP53 0.625 1 1 0.7692308
#> U2AF1 0.625 1 1 0.7692308
#> TCGA-50-5942-01 TCGA-50-5944-01 TCGA-50-5946-01 TCGA-50-6591-01
#> ARID1A 1 1 0.5263158 1
#> ATM 1 1 0.5263158 1
#> BRAF 1 1 0.5263158 1
#> CDKN2A 1 1 0.5263158 1
#> CMTR2 1 1 0.5263158 1
#> CTNNB1 1 1 0.5263158 1
#> EGFR 1 1 0.5263158 1
#> KEAP1 1 1 0.5263158 1
#> KRAS 1 1 0.5263158 1
#> MGA 1 1 0.5263158 1
#> NF1 1 1 0.5263158 1
#> PIK3CA 1 1 0.5263158 1
#> PTPRD 1 1 0.5263158 1
#> PTPRT 1 1 0.5263158 1
#> RB1 1 1 0.5263158 1
#> RBM10 1 1 0.5263158 1
#> SETBP1 1 1 0.5263158 1
#> SETD2 1 1 0.5263158 1
#> SMAD4 1 1 0.5263158 1
#> SMARCA4 1 1 0.5263158 1
#> STK11 1 1 0.5263158 1
#> TP53 1 1 0.5263158 1
#> U2AF1 1 1 0.5263158 1
#> TCGA-50-6592-01 TCGA-50-6593-01 TCGA-50-6594-01 TCGA-50-6595-01
#> ARID1A 0.7692308 0.7692308 0.625 1
#> ATM 0.7692308 0.7692308 0.625 1
#> BRAF 0.7692308 0.7692308 0.625 1
#> CDKN2A 0.7692308 0.7692308 0.625 1
#> CMTR2 0.7692308 0.7692308 0.625 1
#> CTNNB1 0.7692308 0.7692308 0.625 1
#> EGFR 0.7692308 0.7692308 0.625 1
#> KEAP1 0.7692308 0.7692308 0.625 1
#> KRAS 0.7692308 0.7692308 0.625 1
#> MGA 0.7692308 0.7692308 0.625 1
#> NF1 0.7692308 0.7692308 0.625 1
#> PIK3CA 0.7692308 0.7692308 0.625 1
#> PTPRD 0.7692308 0.7692308 0.625 1
#> PTPRT 0.7692308 0.7692308 0.625 1
#> RB1 0.7692308 0.7692308 0.625 1
#> RBM10 0.7692308 0.7692308 0.625 1
#> SETBP1 0.7692308 0.7692308 0.625 1
#> SETD2 0.7692308 0.7692308 0.625 1
#> SMAD4 0.7692308 0.7692308 0.625 1
#> SMARCA4 0.7692308 0.7692308 0.625 1
#> STK11 0.7692308 0.7692308 0.625 1
#> TP53 0.7692308 0.7692308 0.625 1
#> U2AF1 0.7692308 0.7692308 0.625 1
#> TCGA-50-6673-01 TCGA-50-7109-01 TCGA-50-8459-01 TCGA-50-8460-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-53-7626-01 TCGA-53-7813-01 TCGA-53-A4EZ-01 TCGA-55-1592-01
#> ARID1A 0.4 1 0.625 0.625
#> ATM 0.4 1 0.625 0.625
#> BRAF 0.4 1 0.625 0.625
#> CDKN2A 0.4 1 0.625 0.625
#> CMTR2 0.4 1 0.625 0.625
#> CTNNB1 0.4 1 0.625 0.625
#> EGFR 0.4 1 0.625 0.625
#> KEAP1 0.4 1 0.625 0.625
#> KRAS 0.4 1 0.625 0.625
#> MGA 0.4 1 0.625 0.625
#> NF1 0.4 1 0.625 0.625
#> PIK3CA 0.4 1 0.625 0.625
#> PTPRD 0.4 1 0.625 0.625
#> PTPRT 0.4 1 0.625 0.625
#> RB1 0.4 1 0.625 0.625
#> RBM10 0.4 1 0.625 0.625
#> SETBP1 0.4 1 0.625 0.625
#> SETD2 0.4 1 0.625 0.625
#> SMAD4 0.4 1 0.625 0.625
#> SMARCA4 0.4 1 0.625 0.625
#> STK11 0.4 1 0.625 0.625
#> TP53 0.4 1 0.625 0.625
#> U2AF1 0.4 1 0.625 0.625
#> TCGA-55-1595-01 TCGA-55-1596-01 TCGA-55-6642-01 TCGA-55-6968-01
#> ARID1A 0.7692308 1 1 0.625
#> ATM 0.7692308 1 1 0.625
#> BRAF 0.7692308 1 1 0.625
#> CDKN2A 0.7692308 1 1 0.625
#> CMTR2 0.7692308 1 1 0.625
#> CTNNB1 0.7692308 1 1 0.625
#> EGFR 0.7692308 1 1 0.625
#> KEAP1 0.7692308 1 1 0.625
#> KRAS 0.7692308 1 1 0.625
#> MGA 0.7692308 1 1 0.625
#> NF1 0.7692308 1 1 0.625
#> PIK3CA 0.7692308 1 1 0.625
#> PTPRD 0.7692308 1 1 0.625
#> PTPRT 0.7692308 1 1 0.625
#> RB1 0.7692308 1 1 0.625
#> RBM10 0.7692308 1 1 0.625
#> SETBP1 0.7692308 1 1 0.625
#> SETD2 0.7692308 1 1 0.625
#> SMAD4 0.7692308 1 1 0.625
#> SMARCA4 0.7692308 1 1 0.625
#> STK11 0.7692308 1 1 0.625
#> TP53 0.7692308 1 1 0.625
#> U2AF1 0.7692308 1 1 0.625
#> TCGA-55-6969-01 TCGA-55-6970-01 TCGA-55-6975-01 TCGA-55-6979-01
#> ARID1A 0.625 1 1 0.625
#> ATM 0.625 1 1 0.625
#> BRAF 0.625 1 1 0.625
#> CDKN2A 0.625 1 1 0.625
#> CMTR2 0.625 1 1 0.625
#> CTNNB1 0.625 1 1 0.625
#> EGFR 0.625 1 1 0.625
#> KEAP1 0.625 1 1 0.625
#> KRAS 0.625 1 1 0.625
#> MGA 0.625 1 1 0.625
#> NF1 0.625 1 1 0.625
#> PIK3CA 0.625 1 1 0.625
#> PTPRD 0.625 1 1 0.625
#> PTPRT 0.625 1 1 0.625
#> RB1 0.625 1 1 0.625
#> RBM10 0.625 1 1 0.625
#> SETBP1 0.625 1 1 0.625
#> SETD2 0.625 1 1 0.625
#> SMAD4 0.625 1 1 0.625
#> SMARCA4 0.625 1 1 0.625
#> STK11 0.625 1 1 0.625
#> TP53 0.625 1 1 0.625
#> U2AF1 0.625 1 1 0.625
#> TCGA-55-6981-01 TCGA-55-6983-01 TCGA-55-6984-01 TCGA-55-7281-01
#> ARID1A 0.7692308 1 1 0.625
#> ATM 0.7692308 1 1 0.625
#> BRAF 0.7692308 1 1 0.625
#> CDKN2A 0.7692308 1 1 0.625
#> CMTR2 0.7692308 1 1 0.625
#> CTNNB1 0.7692308 1 1 0.625
#> EGFR 0.7692308 1 1 0.625
#> KEAP1 0.7692308 1 1 0.625
#> KRAS 0.7692308 1 1 0.625
#> MGA 0.7692308 1 1 0.625
#> NF1 0.7692308 1 1 0.625
#> PIK3CA 0.7692308 1 1 0.625
#> PTPRD 0.7692308 1 1 0.625
#> PTPRT 0.7692308 1 1 0.625
#> RB1 0.7692308 1 1 0.625
#> RBM10 0.7692308 1 1 0.625
#> SETBP1 0.7692308 1 1 0.625
#> SETD2 0.7692308 1 1 0.625
#> SMAD4 0.7692308 1 1 0.625
#> SMARCA4 0.7692308 1 1 0.625
#> STK11 0.7692308 1 1 0.625
#> TP53 0.7692308 1 1 0.625
#> U2AF1 0.7692308 1 1 0.625
#> TCGA-55-7283-01 TCGA-55-7284-01 TCGA-55-7570-01 TCGA-55-7573-01
#> ARID1A 0.7692308 1 0.7692308 1
#> ATM 0.7692308 1 0.7692308 1
#> BRAF 0.7692308 1 0.7692308 1
#> CDKN2A 0.7692308 1 0.7692308 1
#> CMTR2 0.7692308 1 0.7692308 1
#> CTNNB1 0.7692308 1 0.7692308 1
#> EGFR 0.7692308 1 0.7692308 1
#> KEAP1 0.7692308 1 0.7692308 1
#> KRAS 0.7692308 1 0.7692308 1
#> MGA 0.7692308 1 0.7692308 1
#> NF1 0.7692308 1 0.7692308 1
#> PIK3CA 0.7692308 1 0.7692308 1
#> PTPRD 0.7692308 1 0.7692308 1
#> PTPRT 0.7692308 1 0.7692308 1
#> RB1 0.7692308 1 0.7692308 1
#> RBM10 0.7692308 1 0.7692308 1
#> SETBP1 0.7692308 1 0.7692308 1
#> SETD2 0.7692308 1 0.7692308 1
#> SMAD4 0.7692308 1 0.7692308 1
#> SMARCA4 0.7692308 1 0.7692308 1
#> STK11 0.7692308 1 0.7692308 1
#> TP53 0.7692308 1 0.7692308 1
#> U2AF1 0.7692308 1 0.7692308 1
#> TCGA-55-7576-01 TCGA-55-7724-01 TCGA-55-7725-01 TCGA-55-7726-01
#> ARID1A 0.7692308 0.7692308 1 1
#> ATM 0.7692308 0.7692308 1 1
#> BRAF 0.7692308 0.7692308 1 1
#> CDKN2A 0.7692308 0.7692308 1 1
#> CMTR2 0.7692308 0.7692308 1 1
#> CTNNB1 0.7692308 0.7692308 1 1
#> EGFR 0.7692308 0.7692308 1 1
#> KEAP1 0.7692308 0.7692308 1 1
#> KRAS 0.7692308 0.7692308 1 1
#> MGA 0.7692308 0.7692308 1 1
#> NF1 0.7692308 0.7692308 1 1
#> PIK3CA 0.7692308 0.7692308 1 1
#> PTPRD 0.7692308 0.7692308 1 1
#> PTPRT 0.7692308 0.7692308 1 1
#> RB1 0.7692308 0.7692308 1 1
#> RBM10 0.7692308 0.7692308 1 1
#> SETBP1 0.7692308 0.7692308 1 1
#> SETD2 0.7692308 0.7692308 1 1
#> SMAD4 0.7692308 0.7692308 1 1
#> SMARCA4 0.7692308 0.7692308 1 1
#> STK11 0.7692308 0.7692308 1 1
#> TP53 0.7692308 0.7692308 1 1
#> U2AF1 0.7692308 0.7692308 1 1
#> TCGA-55-7727-01 TCGA-55-7728-01 TCGA-55-7815-01 TCGA-55-7903-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-55-7907-01 TCGA-55-7910-01 TCGA-55-7911-01 TCGA-55-7913-01
#> ARID1A 0.4 0.7692308 0.7692308 0.7692308
#> ATM 0.4 0.7692308 0.7692308 0.7692308
#> BRAF 0.4 0.7692308 0.7692308 0.7692308
#> CDKN2A 0.4 0.7692308 0.7692308 0.7692308
#> CMTR2 0.4 0.7692308 0.7692308 0.7692308
#> CTNNB1 0.4 0.7692308 0.7692308 0.7692308
#> EGFR 0.4 0.7692308 0.7692308 0.7692308
#> KEAP1 0.4 0.7692308 0.7692308 0.7692308
#> KRAS 0.4 0.7692308 0.7692308 0.7692308
#> MGA 0.4 0.7692308 0.7692308 0.7692308
#> NF1 0.4 0.7692308 0.7692308 0.7692308
#> PIK3CA 0.4 0.7692308 0.7692308 0.7692308
#> PTPRD 0.4 0.7692308 0.7692308 0.7692308
#> PTPRT 0.4 0.7692308 0.7692308 0.7692308
#> RB1 0.4 0.7692308 0.7692308 0.7692308
#> RBM10 0.4 0.7692308 0.7692308 0.7692308
#> SETBP1 0.4 0.7692308 0.7692308 0.7692308
#> SETD2 0.4 0.7692308 0.7692308 0.7692308
#> SMAD4 0.4 0.7692308 0.7692308 0.7692308
#> SMARCA4 0.4 0.7692308 0.7692308 0.7692308
#> STK11 0.4 0.7692308 0.7692308 0.7692308
#> TP53 0.4 0.7692308 0.7692308 0.7692308
#> U2AF1 0.4 0.7692308 0.7692308 0.7692308
#> TCGA-55-7914-01 TCGA-55-7994-01 TCGA-55-7995-01 TCGA-55-8085-01
#> ARID1A 1 0.3225806 0.5263158 0.7692308
#> ATM 1 0.3225806 0.5263158 0.7692308
#> BRAF 1 0.3225806 0.5263158 0.7692308
#> CDKN2A 1 0.3225806 0.5263158 0.7692308
#> CMTR2 1 0.3225806 0.5263158 0.7692308
#> CTNNB1 1 0.3225806 0.5263158 0.7692308
#> EGFR 1 0.3225806 0.5263158 0.7692308
#> KEAP1 1 0.3225806 0.5263158 0.7692308
#> KRAS 1 0.3225806 0.5263158 0.7692308
#> MGA 1 0.3225806 0.5263158 0.7692308
#> NF1 1 0.3225806 0.5263158 0.7692308
#> PIK3CA 1 0.3225806 0.5263158 0.7692308
#> PTPRD 1 0.3225806 0.5263158 0.7692308
#> PTPRT 1 0.3225806 0.5263158 0.7692308
#> RB1 1 0.3225806 0.5263158 0.7692308
#> RBM10 1 0.3225806 0.5263158 0.7692308
#> SETBP1 1 0.3225806 0.5263158 0.7692308
#> SETD2 1 0.3225806 0.5263158 0.7692308
#> SMAD4 1 0.3225806 0.5263158 0.7692308
#> SMARCA4 1 0.3225806 0.5263158 0.7692308
#> STK11 1 0.3225806 0.5263158 0.7692308
#> TP53 1 0.3225806 0.5263158 0.7692308
#> U2AF1 1 0.3225806 0.5263158 0.7692308
#> TCGA-55-8089-01 TCGA-55-8090-01 TCGA-55-8092-01 TCGA-55-8094-01
#> ARID1A 0.4 1 0.625 0.625
#> ATM 0.4 1 0.625 0.625
#> BRAF 0.4 1 0.625 0.625
#> CDKN2A 0.4 1 0.625 0.625
#> CMTR2 0.4 1 0.625 0.625
#> CTNNB1 0.4 1 0.625 0.625
#> EGFR 0.4 1 0.625 0.625
#> KEAP1 0.4 1 0.625 0.625
#> KRAS 0.4 1 0.625 0.625
#> MGA 0.4 1 0.625 0.625
#> NF1 0.4 1 0.625 0.625
#> PIK3CA 0.4 1 0.625 0.625
#> PTPRD 0.4 1 0.625 0.625
#> PTPRT 0.4 1 0.625 0.625
#> RB1 0.4 1 0.625 0.625
#> RBM10 0.4 1 0.625 0.625
#> SETBP1 0.4 1 0.625 0.625
#> SETD2 0.4 1 0.625 0.625
#> SMAD4 0.4 1 0.625 0.625
#> SMARCA4 0.4 1 0.625 0.625
#> STK11 0.4 1 0.625 0.625
#> TP53 0.4 1 0.625 0.625
#> U2AF1 0.4 1 0.625 0.625
#> TCGA-55-8096-01 TCGA-55-8097-01 TCGA-55-8203-01 TCGA-55-8205-01
#> ARID1A 1 1 0.7692308 0.625
#> ATM 1 1 0.7692308 0.625
#> BRAF 1 1 0.7692308 0.625
#> CDKN2A 1 1 0.7692308 0.625
#> CMTR2 1 1 0.7692308 0.625
#> CTNNB1 1 1 0.7692308 0.625
#> EGFR 1 1 0.7692308 0.625
#> KEAP1 1 1 0.7692308 0.625
#> KRAS 1 1 0.7692308 0.625
#> MGA 1 1 0.7692308 0.625
#> NF1 1 1 0.7692308 0.625
#> PIK3CA 1 1 0.7692308 0.625
#> PTPRD 1 1 0.7692308 0.625
#> PTPRT 1 1 0.7692308 0.625
#> RB1 1 1 0.7692308 0.625
#> RBM10 1 1 0.7692308 0.625
#> SETBP1 1 1 0.7692308 0.625
#> SETD2 1 1 0.7692308 0.625
#> SMAD4 1 1 0.7692308 0.625
#> SMARCA4 1 1 0.7692308 0.625
#> STK11 1 1 0.7692308 0.625
#> TP53 1 1 0.7692308 0.625
#> U2AF1 1 1 0.7692308 0.625
#> TCGA-55-8207-01 TCGA-55-8208-01 TCGA-55-8299-01 TCGA-55-8301-01
#> ARID1A 0.7692308 0.7692308 0.7692308 0.7692308
#> ATM 0.7692308 0.7692308 0.7692308 0.7692308
#> BRAF 0.7692308 0.7692308 0.7692308 0.7692308
#> CDKN2A 0.7692308 0.7692308 0.7692308 0.7692308
#> CMTR2 0.7692308 0.7692308 0.7692308 0.7692308
#> CTNNB1 0.7692308 0.7692308 0.7692308 0.7692308
#> EGFR 0.7692308 0.7692308 0.7692308 0.7692308
#> KEAP1 0.7692308 0.7692308 0.7692308 0.7692308
#> KRAS 0.7692308 0.7692308 0.7692308 0.7692308
#> MGA 0.7692308 0.7692308 0.7692308 0.7692308
#> NF1 0.7692308 0.7692308 0.7692308 0.7692308
#> PIK3CA 0.7692308 0.7692308 0.7692308 0.7692308
#> PTPRD 0.7692308 0.7692308 0.7692308 0.7692308
#> PTPRT 0.7692308 0.7692308 0.7692308 0.7692308
#> RB1 0.7692308 0.7692308 0.7692308 0.7692308
#> RBM10 0.7692308 0.7692308 0.7692308 0.7692308
#> SETBP1 0.7692308 0.7692308 0.7692308 0.7692308
#> SETD2 0.7692308 0.7692308 0.7692308 0.7692308
#> SMAD4 0.7692308 0.7692308 0.7692308 0.7692308
#> SMARCA4 0.7692308 0.7692308 0.7692308 0.7692308
#> STK11 0.7692308 0.7692308 0.7692308 0.7692308
#> TP53 0.7692308 0.7692308 0.7692308 0.7692308
#> U2AF1 0.7692308 0.7692308 0.7692308 0.7692308
#> TCGA-55-8302-01 TCGA-55-8505-01 TCGA-55-8506-01 TCGA-55-8508-01
#> ARID1A 0.5263158 1 0.2941176 1
#> ATM 0.5263158 1 0.2941176 1
#> BRAF 0.5263158 1 0.2941176 1
#> CDKN2A 0.5263158 1 0.2941176 1
#> CMTR2 0.5263158 1 0.2941176 1
#> CTNNB1 0.5263158 1 0.2941176 1
#> EGFR 0.5263158 1 0.2941176 1
#> KEAP1 0.5263158 1 0.2941176 1
#> KRAS 0.5263158 1 0.2941176 1
#> MGA 0.5263158 1 0.2941176 1
#> NF1 0.5263158 1 0.2941176 1
#> PIK3CA 0.5263158 1 0.2941176 1
#> PTPRD 0.5263158 1 0.2941176 1
#> PTPRT 0.5263158 1 0.2941176 1
#> RB1 0.5263158 1 0.2941176 1
#> RBM10 0.5263158 1 0.2941176 1
#> SETBP1 0.5263158 1 0.2941176 1
#> SETD2 0.5263158 1 0.2941176 1
#> SMAD4 0.5263158 1 0.2941176 1
#> SMARCA4 0.5263158 1 0.2941176 1
#> STK11 0.5263158 1 0.2941176 1
#> TP53 0.5263158 1 0.2941176 1
#> U2AF1 0.5263158 1 0.2941176 1
#> TCGA-55-8511-01 TCGA-55-8512-01 TCGA-55-8514-01 TCGA-55-8614-01
#> ARID1A 0.625 1 0.7692308 0.7692308
#> ATM 0.625 1 0.7692308 0.7692308
#> BRAF 0.625 1 0.7692308 0.7692308
#> CDKN2A 0.625 1 0.7692308 0.7692308
#> CMTR2 0.625 1 0.7692308 0.7692308
#> CTNNB1 0.625 1 0.7692308 0.7692308
#> EGFR 0.625 1 0.7692308 0.7692308
#> KEAP1 0.625 1 0.7692308 0.7692308
#> KRAS 0.625 1 0.7692308 0.7692308
#> MGA 0.625 1 0.7692308 0.7692308
#> NF1 0.625 1 0.7692308 0.7692308
#> PIK3CA 0.625 1 0.7692308 0.7692308
#> PTPRD 0.625 1 0.7692308 0.7692308
#> PTPRT 0.625 1 0.7692308 0.7692308
#> RB1 0.625 1 0.7692308 0.7692308
#> RBM10 0.625 1 0.7692308 0.7692308
#> SETBP1 0.625 1 0.7692308 0.7692308
#> SETD2 0.625 1 0.7692308 0.7692308
#> SMAD4 0.625 1 0.7692308 0.7692308
#> SMARCA4 0.625 1 0.7692308 0.7692308
#> STK11 0.625 1 0.7692308 0.7692308
#> TP53 0.625 1 0.7692308 0.7692308
#> U2AF1 0.625 1 0.7692308 0.7692308
#> TCGA-55-8615-01 TCGA-55-8616-01 TCGA-55-8620-01 TCGA-55-A48X-01
#> ARID1A 1 0.625 0.625 0.7692308
#> ATM 1 0.625 0.625 0.7692308
#> BRAF 1 0.625 0.625 0.7692308
#> CDKN2A 1 0.625 0.625 0.7692308
#> CMTR2 1 0.625 0.625 0.7692308
#> CTNNB1 1 0.625 0.625 0.7692308
#> EGFR 1 0.625 0.625 0.7692308
#> KEAP1 1 0.625 0.625 0.7692308
#> KRAS 1 0.625 0.625 0.7692308
#> MGA 1 0.625 0.625 0.7692308
#> NF1 1 0.625 0.625 0.7692308
#> PIK3CA 1 0.625 0.625 0.7692308
#> PTPRD 1 0.625 0.625 0.7692308
#> PTPRT 1 0.625 0.625 0.7692308
#> RB1 1 0.625 0.625 0.7692308
#> RBM10 1 0.625 0.625 0.7692308
#> SETBP1 1 0.625 0.625 0.7692308
#> SETD2 1 0.625 0.625 0.7692308
#> SMAD4 1 0.625 0.625 0.7692308
#> SMARCA4 1 0.625 0.625 0.7692308
#> STK11 1 0.625 0.625 0.7692308
#> TP53 1 0.625 0.625 0.7692308
#> U2AF1 1 0.625 0.625 0.7692308
#> TCGA-55-A48Y-01 TCGA-55-A48Z-01 TCGA-55-A490-01 TCGA-55-A491-01
#> ARID1A 0.7692308 1 0.3571429 0.7692308
#> ATM 0.7692308 1 0.3571429 0.7692308
#> BRAF 0.7692308 1 0.3571429 0.7692308
#> CDKN2A 0.7692308 1 0.3571429 0.7692308
#> CMTR2 0.7692308 1 0.3571429 0.7692308
#> CTNNB1 0.7692308 1 0.3571429 0.7692308
#> EGFR 0.7692308 1 0.3571429 0.7692308
#> KEAP1 0.7692308 1 0.3571429 0.7692308
#> KRAS 0.7692308 1 0.3571429 0.7692308
#> MGA 0.7692308 1 0.3571429 0.7692308
#> NF1 0.7692308 1 0.3571429 0.7692308
#> PIK3CA 0.7692308 1 0.3571429 0.7692308
#> PTPRD 0.7692308 1 0.3571429 0.7692308
#> PTPRT 0.7692308 1 0.3571429 0.7692308
#> RB1 0.7692308 1 0.3571429 0.7692308
#> RBM10 0.7692308 1 0.3571429 0.7692308
#> SETBP1 0.7692308 1 0.3571429 0.7692308
#> SETD2 0.7692308 1 0.3571429 0.7692308
#> SMAD4 0.7692308 1 0.3571429 0.7692308
#> SMARCA4 0.7692308 1 0.3571429 0.7692308
#> STK11 0.7692308 1 0.3571429 0.7692308
#> TP53 0.7692308 1 0.3571429 0.7692308
#> U2AF1 0.7692308 1 0.3571429 0.7692308
#> TCGA-55-A492-01 TCGA-55-A493-01 TCGA-55-A494-01 TCGA-55-A4DG-01
#> ARID1A 0.7692308 0.7692308 0.7692308 0.5263158
#> ATM 0.7692308 0.7692308 0.7692308 0.5263158
#> BRAF 0.7692308 0.7692308 0.7692308 0.5263158
#> CDKN2A 0.7692308 0.7692308 0.7692308 0.5263158
#> CMTR2 0.7692308 0.7692308 0.7692308 0.5263158
#> CTNNB1 0.7692308 0.7692308 0.7692308 0.5263158
#> EGFR 0.7692308 0.7692308 0.7692308 0.5263158
#> KEAP1 0.7692308 0.7692308 0.7692308 0.5263158
#> KRAS 0.7692308 0.7692308 0.7692308 0.5263158
#> MGA 0.7692308 0.7692308 0.7692308 0.5263158
#> NF1 0.7692308 0.7692308 0.7692308 0.5263158
#> PIK3CA 0.7692308 0.7692308 0.7692308 0.5263158
#> PTPRD 0.7692308 0.7692308 0.7692308 0.5263158
#> PTPRT 0.7692308 0.7692308 0.7692308 0.5263158
#> RB1 0.7692308 0.7692308 0.7692308 0.5263158
#> RBM10 0.7692308 0.7692308 0.7692308 0.5263158
#> SETBP1 0.7692308 0.7692308 0.7692308 0.5263158
#> SETD2 0.7692308 0.7692308 0.7692308 0.5263158
#> SMAD4 0.7692308 0.7692308 0.7692308 0.5263158
#> SMARCA4 0.7692308 0.7692308 0.7692308 0.5263158
#> STK11 0.7692308 0.7692308 0.7692308 0.5263158
#> TP53 0.7692308 0.7692308 0.7692308 0.5263158
#> U2AF1 0.7692308 0.7692308 0.7692308 0.5263158
#> TCGA-55-A57B-01 TCGA-62-8394-01 TCGA-62-8395-01 TCGA-62-8398-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-62-8399-01 TCGA-62-8402-01 TCGA-62-A46R-01 TCGA-62-A46S-01
#> ARID1A 0.625 1 1 1
#> ATM 0.625 1 1 1
#> BRAF 0.625 1 1 1
#> CDKN2A 0.625 1 1 1
#> CMTR2 0.625 1 1 1
#> CTNNB1 0.625 1 1 1
#> EGFR 0.625 1 1 1
#> KEAP1 0.625 1 1 1
#> KRAS 0.625 1 1 1
#> MGA 0.625 1 1 1
#> NF1 0.625 1 1 1
#> PIK3CA 0.625 1 1 1
#> PTPRD 0.625 1 1 1
#> PTPRT 0.625 1 1 1
#> RB1 0.625 1 1 1
#> RBM10 0.625 1 1 1
#> SETBP1 0.625 1 1 1
#> SETD2 0.625 1 1 1
#> SMAD4 0.625 1 1 1
#> SMARCA4 0.625 1 1 1
#> STK11 0.625 1 1 1
#> TP53 0.625 1 1 1
#> U2AF1 0.625 1 1 1
#> TCGA-62-A46U-01 TCGA-62-A46V-01 TCGA-62-A470-01 TCGA-62-A471-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-62-A472-01 TCGA-64-1676-01 TCGA-64-1677-01 TCGA-64-1679-01
#> ARID1A 1 0.625 1 0.625
#> ATM 1 0.625 1 0.625
#> BRAF 1 0.625 1 0.625
#> CDKN2A 1 0.625 1 0.625
#> CMTR2 1 0.625 1 0.625
#> CTNNB1 1 0.625 1 0.625
#> EGFR 1 0.625 1 0.625
#> KEAP1 1 0.625 1 0.625
#> KRAS 1 0.625 1 0.625
#> MGA 1 0.625 1 0.625
#> NF1 1 0.625 1 0.625
#> PIK3CA 1 0.625 1 0.625
#> PTPRD 1 0.625 1 0.625
#> PTPRT 1 0.625 1 0.625
#> RB1 1 0.625 1 0.625
#> RBM10 1 0.625 1 0.625
#> SETBP1 1 0.625 1 0.625
#> SETD2 1 0.625 1 0.625
#> SMAD4 1 0.625 1 0.625
#> SMARCA4 1 0.625 1 0.625
#> STK11 1 0.625 1 0.625
#> TP53 1 0.625 1 0.625
#> U2AF1 1 0.625 1 0.625
#> TCGA-64-1680-01 TCGA-64-1681-01 TCGA-64-5774-01 TCGA-64-5775-01
#> ARID1A 1 1 1 0.625
#> ATM 1 1 1 0.625
#> BRAF 1 1 1 0.625
#> CDKN2A 1 1 1 0.625
#> CMTR2 1 1 1 0.625
#> CTNNB1 1 1 1 0.625
#> EGFR 1 1 1 0.625
#> KEAP1 1 1 1 0.625
#> KRAS 1 1 1 0.625
#> MGA 1 1 1 0.625
#> NF1 1 1 1 0.625
#> PIK3CA 1 1 1 0.625
#> PTPRD 1 1 1 0.625
#> PTPRT 1 1 1 0.625
#> RB1 1 1 1 0.625
#> RBM10 1 1 1 0.625
#> SETBP1 1 1 1 0.625
#> SETD2 1 1 1 0.625
#> SMAD4 1 1 1 0.625
#> SMARCA4 1 1 1 0.625
#> STK11 1 1 1 0.625
#> TP53 1 1 1 0.625
#> U2AF1 1 1 1 0.625
#> TCGA-64-5778-01 TCGA-64-5815-01 TCGA-67-3771-01 TCGA-67-3772-01
#> ARID1A 0.625 1 0.4545455 1
#> ATM 0.625 1 0.4545455 1
#> BRAF 0.625 1 0.4545455 1
#> CDKN2A 0.625 1 0.4545455 1
#> CMTR2 0.625 1 0.4545455 1
#> CTNNB1 0.625 1 0.4545455 1
#> EGFR 0.625 1 0.4545455 1
#> KEAP1 0.625 1 0.4545455 1
#> KRAS 0.625 1 0.4545455 1
#> MGA 0.625 1 0.4545455 1
#> NF1 0.625 1 0.4545455 1
#> PIK3CA 0.625 1 0.4545455 1
#> PTPRD 0.625 1 0.4545455 1
#> PTPRT 0.625 1 0.4545455 1
#> RB1 0.625 1 0.4545455 1
#> RBM10 0.625 1 0.4545455 1
#> SETBP1 0.625 1 0.4545455 1
#> SETD2 0.625 1 0.4545455 1
#> SMAD4 0.625 1 0.4545455 1
#> SMARCA4 0.625 1 0.4545455 1
#> STK11 0.625 1 0.4545455 1
#> TP53 0.625 1 0.4545455 1
#> U2AF1 0.625 1 0.4545455 1
#> TCGA-67-3773-01 TCGA-67-3774-01 TCGA-67-4679-01 TCGA-67-6215-01
#> ARID1A 1 1 0.7692308 1
#> ATM 1 1 0.7692308 1
#> BRAF 1 1 0.7692308 1
#> CDKN2A 1 1 0.7692308 1
#> CMTR2 1 1 0.7692308 1
#> CTNNB1 1 1 0.7692308 1
#> EGFR 1 1 0.7692308 1
#> KEAP1 1 1 0.7692308 1
#> KRAS 1 1 0.7692308 1
#> MGA 1 1 0.7692308 1
#> NF1 1 1 0.7692308 1
#> PIK3CA 1 1 0.7692308 1
#> PTPRD 1 1 0.7692308 1
#> PTPRT 1 1 0.7692308 1
#> RB1 1 1 0.7692308 1
#> RBM10 1 1 0.7692308 1
#> SETBP1 1 1 0.7692308 1
#> SETD2 1 1 0.7692308 1
#> SMAD4 1 1 0.7692308 1
#> SMARCA4 1 1 0.7692308 1
#> STK11 1 1 0.7692308 1
#> TP53 1 1 0.7692308 1
#> U2AF1 1 1 0.7692308 1
#> TCGA-67-6216-01 TCGA-67-6217-01 TCGA-69-7765-01 TCGA-69-7973-01
#> ARID1A 1 1 0.625 0.7692308
#> ATM 1 1 0.625 0.7692308
#> BRAF 1 1 0.625 0.7692308
#> CDKN2A 1 1 0.625 0.7692308
#> CMTR2 1 1 0.625 0.7692308
#> CTNNB1 1 1 0.625 0.7692308
#> EGFR 1 1 0.625 0.7692308
#> KEAP1 1 1 0.625 0.7692308
#> KRAS 1 1 0.625 0.7692308
#> MGA 1 1 0.625 0.7692308
#> NF1 1 1 0.625 0.7692308
#> PIK3CA 1 1 0.625 0.7692308
#> PTPRD 1 1 0.625 0.7692308
#> PTPRT 1 1 0.625 0.7692308
#> RB1 1 1 0.625 0.7692308
#> RBM10 1 1 0.625 0.7692308
#> SETBP1 1 1 0.625 0.7692308
#> SETD2 1 1 0.625 0.7692308
#> SMAD4 1 1 0.625 0.7692308
#> SMARCA4 1 1 0.625 0.7692308
#> STK11 1 1 0.625 0.7692308
#> TP53 1 1 0.625 0.7692308
#> U2AF1 1 1 0.625 0.7692308
#> TCGA-69-7974-01 TCGA-69-7978-01 TCGA-69-7980-01 TCGA-69-8253-01
#> ARID1A 0.625 0.625 0.5263158 1
#> ATM 0.625 0.625 0.5263158 1
#> BRAF 0.625 0.625 0.5263158 1
#> CDKN2A 0.625 0.625 0.5263158 1
#> CMTR2 0.625 0.625 0.5263158 1
#> CTNNB1 0.625 0.625 0.5263158 1
#> EGFR 0.625 0.625 0.5263158 1
#> KEAP1 0.625 0.625 0.5263158 1
#> KRAS 0.625 0.625 0.5263158 1
#> MGA 0.625 0.625 0.5263158 1
#> NF1 0.625 0.625 0.5263158 1
#> PIK3CA 0.625 0.625 0.5263158 1
#> PTPRD 0.625 0.625 0.5263158 1
#> PTPRT 0.625 0.625 0.5263158 1
#> RB1 0.625 0.625 0.5263158 1
#> RBM10 0.625 0.625 0.5263158 1
#> SETBP1 0.625 0.625 0.5263158 1
#> SETD2 0.625 0.625 0.5263158 1
#> SMAD4 0.625 0.625 0.5263158 1
#> SMARCA4 0.625 0.625 0.5263158 1
#> STK11 0.625 0.625 0.5263158 1
#> TP53 0.625 0.625 0.5263158 1
#> U2AF1 0.625 0.625 0.5263158 1
#> TCGA-69-8254-01 TCGA-73-4658-01 TCGA-73-4662-01 TCGA-73-4666-01
#> ARID1A 1 0.7692308 0.7692308 0.7692308
#> ATM 1 0.7692308 0.7692308 0.7692308
#> BRAF 1 0.7692308 0.7692308 0.7692308
#> CDKN2A 1 0.7692308 0.7692308 0.7692308
#> CMTR2 1 0.7692308 0.7692308 0.7692308
#> CTNNB1 1 0.7692308 0.7692308 0.7692308
#> EGFR 1 0.7692308 0.7692308 0.7692308
#> KEAP1 1 0.7692308 0.7692308 0.7692308
#> KRAS 1 0.7692308 0.7692308 0.7692308
#> MGA 1 0.7692308 0.7692308 0.7692308
#> NF1 1 0.7692308 0.7692308 0.7692308
#> PIK3CA 1 0.7692308 0.7692308 0.7692308
#> PTPRD 1 0.7692308 0.7692308 0.7692308
#> PTPRT 1 0.7692308 0.7692308 0.7692308
#> RB1 1 0.7692308 0.7692308 0.7692308
#> RBM10 1 0.7692308 0.7692308 0.7692308
#> SETBP1 1 0.7692308 0.7692308 0.7692308
#> SETD2 1 0.7692308 0.7692308 0.7692308
#> SMAD4 1 0.7692308 0.7692308 0.7692308
#> SMARCA4 1 0.7692308 0.7692308 0.7692308
#> STK11 1 0.7692308 0.7692308 0.7692308
#> TP53 1 0.7692308 0.7692308 0.7692308
#> U2AF1 1 0.7692308 0.7692308 0.7692308
#> TCGA-73-4670-01 TCGA-73-4676-01 TCGA-73-4677-01 TCGA-73-7498-01
#> ARID1A 0.7692308 1 0.7692308 1
#> ATM 0.7692308 1 0.7692308 1
#> BRAF 0.7692308 1 0.7692308 1
#> CDKN2A 0.7692308 1 0.7692308 1
#> CMTR2 0.7692308 1 0.7692308 1
#> CTNNB1 0.7692308 1 0.7692308 1
#> EGFR 0.7692308 1 0.7692308 1
#> KEAP1 0.7692308 1 0.7692308 1
#> KRAS 0.7692308 1 0.7692308 1
#> MGA 0.7692308 1 0.7692308 1
#> NF1 0.7692308 1 0.7692308 1
#> PIK3CA 0.7692308 1 0.7692308 1
#> PTPRD 0.7692308 1 0.7692308 1
#> PTPRT 0.7692308 1 0.7692308 1
#> RB1 0.7692308 1 0.7692308 1
#> RBM10 0.7692308 1 0.7692308 1
#> SETBP1 0.7692308 1 0.7692308 1
#> SETD2 0.7692308 1 0.7692308 1
#> SMAD4 0.7692308 1 0.7692308 1
#> SMARCA4 0.7692308 1 0.7692308 1
#> STK11 0.7692308 1 0.7692308 1
#> TP53 0.7692308 1 0.7692308 1
#> U2AF1 0.7692308 1 0.7692308 1
#> TCGA-73-7499-01 TCGA-73-A9RS-01 TCGA-75-5126-01 TCGA-75-5146-01
#> ARID1A 1 0.4545455 0.5263158 1
#> ATM 1 0.4545455 0.5263158 1
#> BRAF 1 0.4545455 0.5263158 1
#> CDKN2A 1 0.4545455 0.5263158 1
#> CMTR2 1 0.4545455 0.5263158 1
#> CTNNB1 1 0.4545455 0.5263158 1
#> EGFR 1 0.4545455 0.5263158 1
#> KEAP1 1 0.4545455 0.5263158 1
#> KRAS 1 0.4545455 0.5263158 1
#> MGA 1 0.4545455 0.5263158 1
#> NF1 1 0.4545455 0.5263158 1
#> PIK3CA 1 0.4545455 0.5263158 1
#> PTPRD 1 0.4545455 0.5263158 1
#> PTPRT 1 0.4545455 0.5263158 1
#> RB1 1 0.4545455 0.5263158 1
#> RBM10 1 0.4545455 0.5263158 1
#> SETBP1 1 0.4545455 0.5263158 1
#> SETD2 1 0.4545455 0.5263158 1
#> SMAD4 1 0.4545455 0.5263158 1
#> SMARCA4 1 0.4545455 0.5263158 1
#> STK11 1 0.4545455 0.5263158 1
#> TP53 1 0.4545455 0.5263158 1
#> U2AF1 1 0.4545455 0.5263158 1
#> TCGA-75-5147-01 TCGA-75-6206-01 TCGA-75-6211-01 TCGA-75-6214-01
#> ARID1A 1 1 0.7692308 0.5263158
#> ATM 1 1 0.7692308 0.5263158
#> BRAF 1 1 0.7692308 0.5263158
#> CDKN2A 1 1 0.7692308 0.5263158
#> CMTR2 1 1 0.7692308 0.5263158
#> CTNNB1 1 1 0.7692308 0.5263158
#> EGFR 1 1 0.7692308 0.5263158
#> KEAP1 1 1 0.7692308 0.5263158
#> KRAS 1 1 0.7692308 0.5263158
#> MGA 1 1 0.7692308 0.5263158
#> NF1 1 1 0.7692308 0.5263158
#> PIK3CA 1 1 0.7692308 0.5263158
#> PTPRD 1 1 0.7692308 0.5263158
#> PTPRT 1 1 0.7692308 0.5263158
#> RB1 1 1 0.7692308 0.5263158
#> RBM10 1 1 0.7692308 0.5263158
#> SETBP1 1 1 0.7692308 0.5263158
#> SETD2 1 1 0.7692308 0.5263158
#> SMAD4 1 1 0.7692308 0.5263158
#> SMARCA4 1 1 0.7692308 0.5263158
#> STK11 1 1 0.7692308 0.5263158
#> TP53 1 1 0.7692308 0.5263158
#> U2AF1 1 1 0.7692308 0.5263158
#> TCGA-75-7027-01 TCGA-75-7030-01 TCGA-78-7145-01 TCGA-78-7146-01
#> ARID1A 0.7692308 1 1 0.7692308
#> ATM 0.7692308 1 1 0.7692308
#> BRAF 0.7692308 1 1 0.7692308
#> CDKN2A 0.7692308 1 1 0.7692308
#> CMTR2 0.7692308 1 1 0.7692308
#> CTNNB1 0.7692308 1 1 0.7692308
#> EGFR 0.7692308 1 1 0.7692308
#> KEAP1 0.7692308 1 1 0.7692308
#> KRAS 0.7692308 1 1 0.7692308
#> MGA 0.7692308 1 1 0.7692308
#> NF1 0.7692308 1 1 0.7692308
#> PIK3CA 0.7692308 1 1 0.7692308
#> PTPRD 0.7692308 1 1 0.7692308
#> PTPRT 0.7692308 1 1 0.7692308
#> RB1 0.7692308 1 1 0.7692308
#> RBM10 0.7692308 1 1 0.7692308
#> SETBP1 0.7692308 1 1 0.7692308
#> SETD2 0.7692308 1 1 0.7692308
#> SMAD4 0.7692308 1 1 0.7692308
#> SMARCA4 0.7692308 1 1 0.7692308
#> STK11 0.7692308 1 1 0.7692308
#> TP53 0.7692308 1 1 0.7692308
#> U2AF1 0.7692308 1 1 0.7692308
#> TCGA-78-7147-01 TCGA-78-7148-01 TCGA-78-7149-01 TCGA-78-7150-01
#> ARID1A 0.7692308 0.7692308 1 0.7692308
#> ATM 0.7692308 0.7692308 1 0.7692308
#> BRAF 0.7692308 0.7692308 1 0.7692308
#> CDKN2A 0.7692308 0.7692308 1 0.7692308
#> CMTR2 0.7692308 0.7692308 1 0.7692308
#> CTNNB1 0.7692308 0.7692308 1 0.7692308
#> EGFR 0.7692308 0.7692308 1 0.7692308
#> KEAP1 0.7692308 0.7692308 1 0.7692308
#> KRAS 0.7692308 0.7692308 1 0.7692308
#> MGA 0.7692308 0.7692308 1 0.7692308
#> NF1 0.7692308 0.7692308 1 0.7692308
#> PIK3CA 0.7692308 0.7692308 1 0.7692308
#> PTPRD 0.7692308 0.7692308 1 0.7692308
#> PTPRT 0.7692308 0.7692308 1 0.7692308
#> RB1 0.7692308 0.7692308 1 0.7692308
#> RBM10 0.7692308 0.7692308 1 0.7692308
#> SETBP1 0.7692308 0.7692308 1 0.7692308
#> SETD2 0.7692308 0.7692308 1 0.7692308
#> SMAD4 0.7692308 0.7692308 1 0.7692308
#> SMARCA4 0.7692308 0.7692308 1 0.7692308
#> STK11 0.7692308 0.7692308 1 0.7692308
#> TP53 0.7692308 0.7692308 1 0.7692308
#> U2AF1 0.7692308 0.7692308 1 0.7692308
#> TCGA-78-7152-01 TCGA-78-7153-01 TCGA-78-7155-01 TCGA-78-7158-01
#> ARID1A 1 1 0.3225806 0.7692308
#> ATM 1 1 0.3225806 0.7692308
#> BRAF 1 1 0.3225806 0.7692308
#> CDKN2A 1 1 0.3225806 0.7692308
#> CMTR2 1 1 0.3225806 0.7692308
#> CTNNB1 1 1 0.3225806 0.7692308
#> EGFR 1 1 0.3225806 0.7692308
#> KEAP1 1 1 0.3225806 0.7692308
#> KRAS 1 1 0.3225806 0.7692308
#> MGA 1 1 0.3225806 0.7692308
#> NF1 1 1 0.3225806 0.7692308
#> PIK3CA 1 1 0.3225806 0.7692308
#> PTPRD 1 1 0.3225806 0.7692308
#> PTPRT 1 1 0.3225806 0.7692308
#> RB1 1 1 0.3225806 0.7692308
#> RBM10 1 1 0.3225806 0.7692308
#> SETBP1 1 1 0.3225806 0.7692308
#> SETD2 1 1 0.3225806 0.7692308
#> SMAD4 1 1 0.3225806 0.7692308
#> SMARCA4 1 1 0.3225806 0.7692308
#> STK11 1 1 0.3225806 0.7692308
#> TP53 1 1 0.3225806 0.7692308
#> U2AF1 1 1 0.3225806 0.7692308
#> TCGA-78-7159-01 TCGA-78-7160-01 TCGA-78-7161-01 TCGA-78-7166-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-78-7167-01 TCGA-78-7220-01 TCGA-78-7537-01 TCGA-78-7539-01
#> ARID1A 1 0.5263158 1 0.625
#> ATM 1 0.5263158 1 0.625
#> BRAF 1 0.5263158 1 0.625
#> CDKN2A 1 0.5263158 1 0.625
#> CMTR2 1 0.5263158 1 0.625
#> CTNNB1 1 0.5263158 1 0.625
#> EGFR 1 0.5263158 1 0.625
#> KEAP1 1 0.5263158 1 0.625
#> KRAS 1 0.5263158 1 0.625
#> MGA 1 0.5263158 1 0.625
#> NF1 1 0.5263158 1 0.625
#> PIK3CA 1 0.5263158 1 0.625
#> PTPRD 1 0.5263158 1 0.625
#> PTPRT 1 0.5263158 1 0.625
#> RB1 1 0.5263158 1 0.625
#> RBM10 1 0.5263158 1 0.625
#> SETBP1 1 0.5263158 1 0.625
#> SETD2 1 0.5263158 1 0.625
#> SMAD4 1 0.5263158 1 0.625
#> SMARCA4 1 0.5263158 1 0.625
#> STK11 1 0.5263158 1 0.625
#> TP53 1 0.5263158 1 0.625
#> U2AF1 1 0.5263158 1 0.625
#> TCGA-78-7540-01 TCGA-78-7633-01 TCGA-78-8640-01 TCGA-78-8655-01
#> ARID1A 0.7692308 1 0.5263158 1
#> ATM 0.7692308 1 0.5263158 1
#> BRAF 0.7692308 1 0.5263158 1
#> CDKN2A 0.7692308 1 0.5263158 1
#> CMTR2 0.7692308 1 0.5263158 1
#> CTNNB1 0.7692308 1 0.5263158 1
#> EGFR 0.7692308 1 0.5263158 1
#> KEAP1 0.7692308 1 0.5263158 1
#> KRAS 0.7692308 1 0.5263158 1
#> MGA 0.7692308 1 0.5263158 1
#> NF1 0.7692308 1 0.5263158 1
#> PIK3CA 0.7692308 1 0.5263158 1
#> PTPRD 0.7692308 1 0.5263158 1
#> PTPRT 0.7692308 1 0.5263158 1
#> RB1 0.7692308 1 0.5263158 1
#> RBM10 0.7692308 1 0.5263158 1
#> SETBP1 0.7692308 1 0.5263158 1
#> SETD2 0.7692308 1 0.5263158 1
#> SMAD4 0.7692308 1 0.5263158 1
#> SMARCA4 0.7692308 1 0.5263158 1
#> STK11 0.7692308 1 0.5263158 1
#> TP53 0.7692308 1 0.5263158 1
#> U2AF1 0.7692308 1 0.5263158 1
#> TCGA-78-8660-01 TCGA-78-8662-01 TCGA-80-5607-01 TCGA-80-5608-01
#> ARID1A 0.7692308 0.4 1 0.7692308
#> ATM 0.7692308 0.4 1 0.7692308
#> BRAF 0.7692308 0.4 1 0.7692308
#> CDKN2A 0.7692308 0.4 1 0.7692308
#> CMTR2 0.7692308 0.4 1 0.7692308
#> CTNNB1 0.7692308 0.4 1 0.7692308
#> EGFR 0.7692308 0.4 1 0.7692308
#> KEAP1 0.7692308 0.4 1 0.7692308
#> KRAS 0.7692308 0.4 1 0.7692308
#> MGA 0.7692308 0.4 1 0.7692308
#> NF1 0.7692308 0.4 1 0.7692308
#> PIK3CA 0.7692308 0.4 1 0.7692308
#> PTPRD 0.7692308 0.4 1 0.7692308
#> PTPRT 0.7692308 0.4 1 0.7692308
#> RB1 0.7692308 0.4 1 0.7692308
#> RBM10 0.7692308 0.4 1 0.7692308
#> SETBP1 0.7692308 0.4 1 0.7692308
#> SETD2 0.7692308 0.4 1 0.7692308
#> SMAD4 0.7692308 0.4 1 0.7692308
#> SMARCA4 0.7692308 0.4 1 0.7692308
#> STK11 0.7692308 0.4 1 0.7692308
#> TP53 0.7692308 0.4 1 0.7692308
#> U2AF1 0.7692308 0.4 1 0.7692308
#> TCGA-83-5908-01 TCGA-86-6851-01 TCGA-86-7711-01 TCGA-86-7713-01
#> ARID1A 0.7692308 0.4545455 0.7692308 1
#> ATM 0.7692308 0.4545455 0.7692308 1
#> BRAF 0.7692308 0.4545455 0.7692308 1
#> CDKN2A 0.7692308 0.4545455 0.7692308 1
#> CMTR2 0.7692308 0.4545455 0.7692308 1
#> CTNNB1 0.7692308 0.4545455 0.7692308 1
#> EGFR 0.7692308 0.4545455 0.7692308 1
#> KEAP1 0.7692308 0.4545455 0.7692308 1
#> KRAS 0.7692308 0.4545455 0.7692308 1
#> MGA 0.7692308 0.4545455 0.7692308 1
#> NF1 0.7692308 0.4545455 0.7692308 1
#> PIK3CA 0.7692308 0.4545455 0.7692308 1
#> PTPRD 0.7692308 0.4545455 0.7692308 1
#> PTPRT 0.7692308 0.4545455 0.7692308 1
#> RB1 0.7692308 0.4545455 0.7692308 1
#> RBM10 0.7692308 0.4545455 0.7692308 1
#> SETBP1 0.7692308 0.4545455 0.7692308 1
#> SETD2 0.7692308 0.4545455 0.7692308 1
#> SMAD4 0.7692308 0.4545455 0.7692308 1
#> SMARCA4 0.7692308 0.4545455 0.7692308 1
#> STK11 0.7692308 0.4545455 0.7692308 1
#> TP53 0.7692308 0.4545455 0.7692308 1
#> U2AF1 0.7692308 0.4545455 0.7692308 1
#> TCGA-86-7714-01 TCGA-86-7953-01 TCGA-86-7954-01 TCGA-86-8054-01
#> ARID1A 1 1 1 0.7692308
#> ATM 1 1 1 0.7692308
#> BRAF 1 1 1 0.7692308
#> CDKN2A 1 1 1 0.7692308
#> CMTR2 1 1 1 0.7692308
#> CTNNB1 1 1 1 0.7692308
#> EGFR 1 1 1 0.7692308
#> KEAP1 1 1 1 0.7692308
#> KRAS 1 1 1 0.7692308
#> MGA 1 1 1 0.7692308
#> NF1 1 1 1 0.7692308
#> PIK3CA 1 1 1 0.7692308
#> PTPRD 1 1 1 0.7692308
#> PTPRT 1 1 1 0.7692308
#> RB1 1 1 1 0.7692308
#> RBM10 1 1 1 0.7692308
#> SETBP1 1 1 1 0.7692308
#> SETD2 1 1 1 0.7692308
#> SMAD4 1 1 1 0.7692308
#> SMARCA4 1 1 1 0.7692308
#> STK11 1 1 1 0.7692308
#> TP53 1 1 1 0.7692308
#> U2AF1 1 1 1 0.7692308
#> TCGA-86-8055-01 TCGA-86-8056-01 TCGA-86-8074-01 TCGA-86-8075-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-86-8076-01 TCGA-86-8278-01 TCGA-86-8279-01 TCGA-86-8280-01
#> ARID1A 1 1 0.625 1
#> ATM 1 1 0.625 1
#> BRAF 1 1 0.625 1
#> CDKN2A 1 1 0.625 1
#> CMTR2 1 1 0.625 1
#> CTNNB1 1 1 0.625 1
#> EGFR 1 1 0.625 1
#> KEAP1 1 1 0.625 1
#> KRAS 1 1 0.625 1
#> MGA 1 1 0.625 1
#> NF1 1 1 0.625 1
#> PIK3CA 1 1 0.625 1
#> PTPRD 1 1 0.625 1
#> PTPRT 1 1 0.625 1
#> RB1 1 1 0.625 1
#> RBM10 1 1 0.625 1
#> SETBP1 1 1 0.625 1
#> SETD2 1 1 0.625 1
#> SMAD4 1 1 0.625 1
#> SMARCA4 1 1 0.625 1
#> STK11 1 1 0.625 1
#> TP53 1 1 0.625 1
#> U2AF1 1 1 0.625 1
#> TCGA-86-8281-01 TCGA-86-8359-01 TCGA-86-8585-01 TCGA-86-8668-01
#> ARID1A 0.7692308 1 0.625 1
#> ATM 0.7692308 1 0.625 1
#> BRAF 0.7692308 1 0.625 1
#> CDKN2A 0.7692308 1 0.625 1
#> CMTR2 0.7692308 1 0.625 1
#> CTNNB1 0.7692308 1 0.625 1
#> EGFR 0.7692308 1 0.625 1
#> KEAP1 0.7692308 1 0.625 1
#> KRAS 0.7692308 1 0.625 1
#> MGA 0.7692308 1 0.625 1
#> NF1 0.7692308 1 0.625 1
#> PIK3CA 0.7692308 1 0.625 1
#> PTPRD 0.7692308 1 0.625 1
#> PTPRT 0.7692308 1 0.625 1
#> RB1 0.7692308 1 0.625 1
#> RBM10 0.7692308 1 0.625 1
#> SETBP1 0.7692308 1 0.625 1
#> SETD2 0.7692308 1 0.625 1
#> SMAD4 0.7692308 1 0.625 1
#> SMARCA4 0.7692308 1 0.625 1
#> STK11 0.7692308 1 0.625 1
#> TP53 0.7692308 1 0.625 1
#> U2AF1 0.7692308 1 0.625 1
#> TCGA-86-8673-01 TCGA-86-8674-01 TCGA-86-A456-01 TCGA-86-A4JF-01
#> ARID1A 0.625 0.7692308 0.7692308 0.3571429
#> ATM 0.625 0.7692308 0.7692308 0.3571429
#> BRAF 0.625 0.7692308 0.7692308 0.3571429
#> CDKN2A 0.625 0.7692308 0.7692308 0.3571429
#> CMTR2 0.625 0.7692308 0.7692308 0.3571429
#> CTNNB1 0.625 0.7692308 0.7692308 0.3571429
#> EGFR 0.625 0.7692308 0.7692308 0.3571429
#> KEAP1 0.625 0.7692308 0.7692308 0.3571429
#> KRAS 0.625 0.7692308 0.7692308 0.3571429
#> MGA 0.625 0.7692308 0.7692308 0.3571429
#> NF1 0.625 0.7692308 0.7692308 0.3571429
#> PIK3CA 0.625 0.7692308 0.7692308 0.3571429
#> PTPRD 0.625 0.7692308 0.7692308 0.3571429
#> PTPRT 0.625 0.7692308 0.7692308 0.3571429
#> RB1 0.625 0.7692308 0.7692308 0.3571429
#> RBM10 0.625 0.7692308 0.7692308 0.3571429
#> SETBP1 0.625 0.7692308 0.7692308 0.3571429
#> SETD2 0.625 0.7692308 0.7692308 0.3571429
#> SMAD4 0.625 0.7692308 0.7692308 0.3571429
#> SMARCA4 0.625 0.7692308 0.7692308 0.3571429
#> STK11 0.625 0.7692308 0.7692308 0.3571429
#> TP53 0.625 0.7692308 0.7692308 0.3571429
#> U2AF1 0.625 0.7692308 0.7692308 0.3571429
#> TCGA-86-A4P7-01 TCGA-91-6828-01 TCGA-91-6829-01 TCGA-91-6830-01
#> ARID1A 1 0.7692308 0.5263158 0.7692308
#> ATM 1 0.7692308 0.5263158 0.7692308
#> BRAF 1 0.7692308 0.5263158 0.7692308
#> CDKN2A 1 0.7692308 0.5263158 0.7692308
#> CMTR2 1 0.7692308 0.5263158 0.7692308
#> CTNNB1 1 0.7692308 0.5263158 0.7692308
#> EGFR 1 0.7692308 0.5263158 0.7692308
#> KEAP1 1 0.7692308 0.5263158 0.7692308
#> KRAS 1 0.7692308 0.5263158 0.7692308
#> MGA 1 0.7692308 0.5263158 0.7692308
#> NF1 1 0.7692308 0.5263158 0.7692308
#> PIK3CA 1 0.7692308 0.5263158 0.7692308
#> PTPRD 1 0.7692308 0.5263158 0.7692308
#> PTPRT 1 0.7692308 0.5263158 0.7692308
#> RB1 1 0.7692308 0.5263158 0.7692308
#> RBM10 1 0.7692308 0.5263158 0.7692308
#> SETBP1 1 0.7692308 0.5263158 0.7692308
#> SETD2 1 0.7692308 0.5263158 0.7692308
#> SMAD4 1 0.7692308 0.5263158 0.7692308
#> SMARCA4 1 0.7692308 0.5263158 0.7692308
#> STK11 1 0.7692308 0.5263158 0.7692308
#> TP53 1 0.7692308 0.5263158 0.7692308
#> U2AF1 1 0.7692308 0.5263158 0.7692308
#> TCGA-91-6835-01 TCGA-91-6836-01 TCGA-91-6840-01 TCGA-91-6847-01
#> ARID1A 1 0.625 1 1
#> ATM 1 0.625 1 1
#> BRAF 1 0.625 1 1
#> CDKN2A 1 0.625 1 1
#> CMTR2 1 0.625 1 1
#> CTNNB1 1 0.625 1 1
#> EGFR 1 0.625 1 1
#> KEAP1 1 0.625 1 1
#> KRAS 1 0.625 1 1
#> MGA 1 0.625 1 1
#> NF1 1 0.625 1 1
#> PIK3CA 1 0.625 1 1
#> PTPRD 1 0.625 1 1
#> PTPRT 1 0.625 1 1
#> RB1 1 0.625 1 1
#> RBM10 1 0.625 1 1
#> SETBP1 1 0.625 1 1
#> SETD2 1 0.625 1 1
#> SMAD4 1 0.625 1 1
#> SMARCA4 1 0.625 1 1
#> STK11 1 0.625 1 1
#> TP53 1 0.625 1 1
#> U2AF1 1 0.625 1 1
#> TCGA-91-6848-01 TCGA-91-6849-01 TCGA-91-A4BD-01 TCGA-93-7347-01
#> ARID1A 0.625 1 1 1
#> ATM 0.625 1 1 1
#> BRAF 0.625 1 1 1
#> CDKN2A 0.625 1 1 1
#> CMTR2 0.625 1 1 1
#> CTNNB1 0.625 1 1 1
#> EGFR 0.625 1 1 1
#> KEAP1 0.625 1 1 1
#> KRAS 0.625 1 1 1
#> MGA 0.625 1 1 1
#> NF1 0.625 1 1 1
#> PIK3CA 0.625 1 1 1
#> PTPRD 0.625 1 1 1
#> PTPRT 0.625 1 1 1
#> RB1 0.625 1 1 1
#> RBM10 0.625 1 1 1
#> SETBP1 0.625 1 1 1
#> SETD2 0.625 1 1 1
#> SMAD4 0.625 1 1 1
#> SMARCA4 0.625 1 1 1
#> STK11 0.625 1 1 1
#> TP53 0.625 1 1 1
#> U2AF1 0.625 1 1 1
#> TCGA-93-7348-01 TCGA-93-8067-01 TCGA-93-A4JN-01 TCGA-93-A4JO-01
#> ARID1A 1 0.625 1 1
#> ATM 1 0.625 1 1
#> BRAF 1 0.625 1 1
#> CDKN2A 1 0.625 1 1
#> CMTR2 1 0.625 1 1
#> CTNNB1 1 0.625 1 1
#> EGFR 1 0.625 1 1
#> KEAP1 1 0.625 1 1
#> KRAS 1 0.625 1 1
#> MGA 1 0.625 1 1
#> NF1 1 0.625 1 1
#> PIK3CA 1 0.625 1 1
#> PTPRD 1 0.625 1 1
#> PTPRT 1 0.625 1 1
#> RB1 1 0.625 1 1
#> RBM10 1 0.625 1 1
#> SETBP1 1 0.625 1 1
#> SETD2 1 0.625 1 1
#> SMAD4 1 0.625 1 1
#> SMARCA4 1 0.625 1 1
#> STK11 1 0.625 1 1
#> TP53 1 0.625 1 1
#> U2AF1 1 0.625 1 1
#> TCGA-93-A4JP-01 TCGA-95-7039-01 TCGA-95-7043-01 TCGA-95-7562-01
#> ARID1A 1 0.3571429 0.4 0.625
#> ATM 1 0.3571429 0.4 0.625
#> BRAF 1 0.3571429 0.4 0.625
#> CDKN2A 1 0.3571429 0.4 0.625
#> CMTR2 1 0.3571429 0.4 0.625
#> CTNNB1 1 0.3571429 0.4 0.625
#> EGFR 1 0.3571429 0.4 0.625
#> KEAP1 1 0.3571429 0.4 0.625
#> KRAS 1 0.3571429 0.4 0.625
#> MGA 1 0.3571429 0.4 0.625
#> NF1 1 0.3571429 0.4 0.625
#> PIK3CA 1 0.3571429 0.4 0.625
#> PTPRD 1 0.3571429 0.4 0.625
#> PTPRT 1 0.3571429 0.4 0.625
#> RB1 1 0.3571429 0.4 0.625
#> RBM10 1 0.3571429 0.4 0.625
#> SETBP1 1 0.3571429 0.4 0.625
#> SETD2 1 0.3571429 0.4 0.625
#> SMAD4 1 0.3571429 0.4 0.625
#> SMARCA4 1 0.3571429 0.4 0.625
#> STK11 1 0.3571429 0.4 0.625
#> TP53 1 0.3571429 0.4 0.625
#> U2AF1 1 0.3571429 0.4 0.625
#> TCGA-95-7567-01 TCGA-95-7944-01 TCGA-95-7947-01 TCGA-95-7948-01
#> ARID1A 0.4545455 0.7692308 0.625 1
#> ATM 0.4545455 0.7692308 0.625 1
#> BRAF 0.4545455 0.7692308 0.625 1
#> CDKN2A 0.4545455 0.7692308 0.625 1
#> CMTR2 0.4545455 0.7692308 0.625 1
#> CTNNB1 0.4545455 0.7692308 0.625 1
#> EGFR 0.4545455 0.7692308 0.625 1
#> KEAP1 0.4545455 0.7692308 0.625 1
#> KRAS 0.4545455 0.7692308 0.625 1
#> MGA 0.4545455 0.7692308 0.625 1
#> NF1 0.4545455 0.7692308 0.625 1
#> PIK3CA 0.4545455 0.7692308 0.625 1
#> PTPRD 0.4545455 0.7692308 0.625 1
#> PTPRT 0.4545455 0.7692308 0.625 1
#> RB1 0.4545455 0.7692308 0.625 1
#> RBM10 0.4545455 0.7692308 0.625 1
#> SETBP1 0.4545455 0.7692308 0.625 1
#> SETD2 0.4545455 0.7692308 0.625 1
#> SMAD4 0.4545455 0.7692308 0.625 1
#> SMARCA4 0.4545455 0.7692308 0.625 1
#> STK11 0.4545455 0.7692308 0.625 1
#> TP53 0.4545455 0.7692308 0.625 1
#> U2AF1 0.4545455 0.7692308 0.625 1
#> TCGA-95-A4VK-01 TCGA-95-A4VN-01 TCGA-95-A4VP-01 TCGA-97-7546-01
#> ARID1A 0.7692308 0.625 1 0.7692308
#> ATM 0.7692308 0.625 1 0.7692308
#> BRAF 0.7692308 0.625 1 0.7692308
#> CDKN2A 0.7692308 0.625 1 0.7692308
#> CMTR2 0.7692308 0.625 1 0.7692308
#> CTNNB1 0.7692308 0.625 1 0.7692308
#> EGFR 0.7692308 0.625 1 0.7692308
#> KEAP1 0.7692308 0.625 1 0.7692308
#> KRAS 0.7692308 0.625 1 0.7692308
#> MGA 0.7692308 0.625 1 0.7692308
#> NF1 0.7692308 0.625 1 0.7692308
#> PIK3CA 0.7692308 0.625 1 0.7692308
#> PTPRD 0.7692308 0.625 1 0.7692308
#> PTPRT 0.7692308 0.625 1 0.7692308
#> RB1 0.7692308 0.625 1 0.7692308
#> RBM10 0.7692308 0.625 1 0.7692308
#> SETBP1 0.7692308 0.625 1 0.7692308
#> SETD2 0.7692308 0.625 1 0.7692308
#> SMAD4 0.7692308 0.625 1 0.7692308
#> SMARCA4 0.7692308 0.625 1 0.7692308
#> STK11 0.7692308 0.625 1 0.7692308
#> TP53 0.7692308 0.625 1 0.7692308
#> U2AF1 0.7692308 0.625 1 0.7692308
#> TCGA-97-7553-01 TCGA-97-7554-01 TCGA-97-7937-01 TCGA-97-7938-01
#> ARID1A 1 0.625 0.625 0.7692308
#> ATM 1 0.625 0.625 0.7692308
#> BRAF 1 0.625 0.625 0.7692308
#> CDKN2A 1 0.625 0.625 0.7692308
#> CMTR2 1 0.625 0.625 0.7692308
#> CTNNB1 1 0.625 0.625 0.7692308
#> EGFR 1 0.625 0.625 0.7692308
#> KEAP1 1 0.625 0.625 0.7692308
#> KRAS 1 0.625 0.625 0.7692308
#> MGA 1 0.625 0.625 0.7692308
#> NF1 1 0.625 0.625 0.7692308
#> PIK3CA 1 0.625 0.625 0.7692308
#> PTPRD 1 0.625 0.625 0.7692308
#> PTPRT 1 0.625 0.625 0.7692308
#> RB1 1 0.625 0.625 0.7692308
#> RBM10 1 0.625 0.625 0.7692308
#> SETBP1 1 0.625 0.625 0.7692308
#> SETD2 1 0.625 0.625 0.7692308
#> SMAD4 1 0.625 0.625 0.7692308
#> SMARCA4 1 0.625 0.625 0.7692308
#> STK11 1 0.625 0.625 0.7692308
#> TP53 1 0.625 0.625 0.7692308
#> U2AF1 1 0.625 0.625 0.7692308
#> TCGA-97-7941-01 TCGA-97-8171-01 TCGA-97-8174-01 TCGA-97-8175-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-97-8176-01 TCGA-97-8177-01 TCGA-97-8179-01 TCGA-97-8547-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-97-A4LX-01 TCGA-97-A4M0-01 TCGA-97-A4M1-01 TCGA-97-A4M3-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-97-A4M5-01 TCGA-97-A4M7-01 TCGA-99-8025-01 TCGA-99-8028-01
#> ARID1A 1 0.7692308 0.625 0.625
#> ATM 1 0.7692308 0.625 0.625
#> BRAF 1 0.7692308 0.625 0.625
#> CDKN2A 1 0.7692308 0.625 0.625
#> CMTR2 1 0.7692308 0.625 0.625
#> CTNNB1 1 0.7692308 0.625 0.625
#> EGFR 1 0.7692308 0.625 0.625
#> KEAP1 1 0.7692308 0.625 0.625
#> KRAS 1 0.7692308 0.625 0.625
#> MGA 1 0.7692308 0.625 0.625
#> NF1 1 0.7692308 0.625 0.625
#> PIK3CA 1 0.7692308 0.625 0.625
#> PTPRD 1 0.7692308 0.625 0.625
#> PTPRT 1 0.7692308 0.625 0.625
#> RB1 1 0.7692308 0.625 0.625
#> RBM10 1 0.7692308 0.625 0.625
#> SETBP1 1 0.7692308 0.625 0.625
#> SETD2 1 0.7692308 0.625 0.625
#> SMAD4 1 0.7692308 0.625 0.625
#> SMARCA4 1 0.7692308 0.625 0.625
#> STK11 1 0.7692308 0.625 0.625
#> TP53 1 0.7692308 0.625 0.625
#> U2AF1 1 0.7692308 0.625 0.625
#> TCGA-99-8032-01 TCGA-99-8033-01 TCGA-J2-8194-01 TCGA-J2-A4AD-01
#> ARID1A 0.7692308 1 1 0.7692308
#> ATM 0.7692308 1 1 0.7692308
#> BRAF 0.7692308 1 1 0.7692308
#> CDKN2A 0.7692308 1 1 0.7692308
#> CMTR2 0.7692308 1 1 0.7692308
#> CTNNB1 0.7692308 1 1 0.7692308
#> EGFR 0.7692308 1 1 0.7692308
#> KEAP1 0.7692308 1 1 0.7692308
#> KRAS 0.7692308 1 1 0.7692308
#> MGA 0.7692308 1 1 0.7692308
#> NF1 0.7692308 1 1 0.7692308
#> PIK3CA 0.7692308 1 1 0.7692308
#> PTPRD 0.7692308 1 1 0.7692308
#> PTPRT 0.7692308 1 1 0.7692308
#> RB1 0.7692308 1 1 0.7692308
#> RBM10 0.7692308 1 1 0.7692308
#> SETBP1 0.7692308 1 1 0.7692308
#> SETD2 0.7692308 1 1 0.7692308
#> SMAD4 0.7692308 1 1 0.7692308
#> SMARCA4 0.7692308 1 1 0.7692308
#> STK11 0.7692308 1 1 0.7692308
#> TP53 0.7692308 1 1 0.7692308
#> U2AF1 0.7692308 1 1 0.7692308
#> TCGA-J2-A4AG-01 TCGA-L4-A4E5-01 TCGA-L9-A443-01 TCGA-L9-A444-01
#> ARID1A 1 0.7692308 0.7692308 0.625
#> ATM 1 0.7692308 0.7692308 0.625
#> BRAF 1 0.7692308 0.7692308 0.625
#> CDKN2A 1 0.7692308 0.7692308 0.625
#> CMTR2 1 0.7692308 0.7692308 0.625
#> CTNNB1 1 0.7692308 0.7692308 0.625
#> EGFR 1 0.7692308 0.7692308 0.625
#> KEAP1 1 0.7692308 0.7692308 0.625
#> KRAS 1 0.7692308 0.7692308 0.625
#> MGA 1 0.7692308 0.7692308 0.625
#> NF1 1 0.7692308 0.7692308 0.625
#> PIK3CA 1 0.7692308 0.7692308 0.625
#> PTPRD 1 0.7692308 0.7692308 0.625
#> PTPRT 1 0.7692308 0.7692308 0.625
#> RB1 1 0.7692308 0.7692308 0.625
#> RBM10 1 0.7692308 0.7692308 0.625
#> SETBP1 1 0.7692308 0.7692308 0.625
#> SETD2 1 0.7692308 0.7692308 0.625
#> SMAD4 1 0.7692308 0.7692308 0.625
#> SMARCA4 1 0.7692308 0.7692308 0.625
#> STK11 1 0.7692308 0.7692308 0.625
#> TP53 1 0.7692308 0.7692308 0.625
#> U2AF1 1 0.7692308 0.7692308 0.625
#> TCGA-L9-A50W-01 TCGA-L9-A5IP-01 TCGA-L9-A743-01 TCGA-L9-A7SV-01
#> ARID1A 1 0.7692308 1 0.3225806
#> ATM 1 0.7692308 1 0.3225806
#> BRAF 1 0.7692308 1 0.3225806
#> CDKN2A 1 0.7692308 1 0.3225806
#> CMTR2 1 0.7692308 1 0.3225806
#> CTNNB1 1 0.7692308 1 0.3225806
#> EGFR 1 0.7692308 1 0.3225806
#> KEAP1 1 0.7692308 1 0.3225806
#> KRAS 1 0.7692308 1 0.3225806
#> MGA 1 0.7692308 1 0.3225806
#> NF1 1 0.7692308 1 0.3225806
#> PIK3CA 1 0.7692308 1 0.3225806
#> PTPRD 1 0.7692308 1 0.3225806
#> PTPRT 1 0.7692308 1 0.3225806
#> RB1 1 0.7692308 1 0.3225806
#> RBM10 1 0.7692308 1 0.3225806
#> SETBP1 1 0.7692308 1 0.3225806
#> SETD2 1 0.7692308 1 0.3225806
#> SMAD4 1 0.7692308 1 0.3225806
#> SMARCA4 1 0.7692308 1 0.3225806
#> STK11 1 0.7692308 1 0.3225806
#> TP53 1 0.7692308 1 0.3225806
#> U2AF1 1 0.7692308 1 0.3225806
#> TCGA-L9-A8F4-01 TCGA-MN-A4N1-01 TCGA-MN-A4N4-01 TCGA-MN-A4N5-01
#> ARID1A 0.5263158 0.625 0.3571429 0.625
#> ATM 0.5263158 0.625 0.3571429 0.625
#> BRAF 0.5263158 0.625 0.3571429 0.625
#> CDKN2A 0.5263158 0.625 0.3571429 0.625
#> CMTR2 0.5263158 0.625 0.3571429 0.625
#> CTNNB1 0.5263158 0.625 0.3571429 0.625
#> EGFR 0.5263158 0.625 0.3571429 0.625
#> KEAP1 0.5263158 0.625 0.3571429 0.625
#> KRAS 0.5263158 0.625 0.3571429 0.625
#> MGA 0.5263158 0.625 0.3571429 0.625
#> NF1 0.5263158 0.625 0.3571429 0.625
#> PIK3CA 0.5263158 0.625 0.3571429 0.625
#> PTPRD 0.5263158 0.625 0.3571429 0.625
#> PTPRT 0.5263158 0.625 0.3571429 0.625
#> RB1 0.5263158 0.625 0.3571429 0.625
#> RBM10 0.5263158 0.625 0.3571429 0.625
#> SETBP1 0.5263158 0.625 0.3571429 0.625
#> SETD2 0.5263158 0.625 0.3571429 0.625
#> SMAD4 0.5263158 0.625 0.3571429 0.625
#> SMARCA4 0.5263158 0.625 0.3571429 0.625
#> STK11 0.5263158 0.625 0.3571429 0.625
#> TP53 0.5263158 0.625 0.3571429 0.625
#> U2AF1 0.5263158 0.625 0.3571429 0.625
#> TCGA-MP-A4SV-01 TCGA-MP-A4SW-01 TCGA-MP-A4SY-01 TCGA-MP-A4T4-01
#> ARID1A 0.7692308 1 1 0.7692308
#> ATM 0.7692308 1 1 0.7692308
#> BRAF 0.7692308 1 1 0.7692308
#> CDKN2A 0.7692308 1 1 0.7692308
#> CMTR2 0.7692308 1 1 0.7692308
#> CTNNB1 0.7692308 1 1 0.7692308
#> EGFR 0.7692308 1 1 0.7692308
#> KEAP1 0.7692308 1 1 0.7692308
#> KRAS 0.7692308 1 1 0.7692308
#> MGA 0.7692308 1 1 0.7692308
#> NF1 0.7692308 1 1 0.7692308
#> PIK3CA 0.7692308 1 1 0.7692308
#> PTPRD 0.7692308 1 1 0.7692308
#> PTPRT 0.7692308 1 1 0.7692308
#> RB1 0.7692308 1 1 0.7692308
#> RBM10 0.7692308 1 1 0.7692308
#> SETBP1 0.7692308 1 1 0.7692308
#> SETD2 0.7692308 1 1 0.7692308
#> SMAD4 0.7692308 1 1 0.7692308
#> SMARCA4 0.7692308 1 1 0.7692308
#> STK11 0.7692308 1 1 0.7692308
#> TP53 0.7692308 1 1 0.7692308
#> U2AF1 0.7692308 1 1 0.7692308
#> TCGA-MP-A4T7-01 TCGA-MP-A4T8-01 TCGA-MP-A4T9-01 TCGA-MP-A4TA-01
#> ARID1A 1 1 1 0.7692308
#> ATM 1 1 1 0.7692308
#> BRAF 1 1 1 0.7692308
#> CDKN2A 1 1 1 0.7692308
#> CMTR2 1 1 1 0.7692308
#> CTNNB1 1 1 1 0.7692308
#> EGFR 1 1 1 0.7692308
#> KEAP1 1 1 1 0.7692308
#> KRAS 1 1 1 0.7692308
#> MGA 1 1 1 0.7692308
#> NF1 1 1 1 0.7692308
#> PIK3CA 1 1 1 0.7692308
#> PTPRD 1 1 1 0.7692308
#> PTPRT 1 1 1 0.7692308
#> RB1 1 1 1 0.7692308
#> RBM10 1 1 1 0.7692308
#> SETBP1 1 1 1 0.7692308
#> SETD2 1 1 1 0.7692308
#> SMAD4 1 1 1 0.7692308
#> SMARCA4 1 1 1 0.7692308
#> STK11 1 1 1 0.7692308
#> TP53 1 1 1 0.7692308
#> U2AF1 1 1 1 0.7692308
#> TCGA-MP-A4TD-01 TCGA-MP-A4TE-01 TCGA-MP-A4TF-01 TCGA-MP-A4TI-01
#> ARID1A 1 1 0.7692308 0.7692308
#> ATM 1 1 0.7692308 0.7692308
#> BRAF 1 1 0.7692308 0.7692308
#> CDKN2A 1 1 0.7692308 0.7692308
#> CMTR2 1 1 0.7692308 0.7692308
#> CTNNB1 1 1 0.7692308 0.7692308
#> EGFR 1 1 0.7692308 0.7692308
#> KEAP1 1 1 0.7692308 0.7692308
#> KRAS 1 1 0.7692308 0.7692308
#> MGA 1 1 0.7692308 0.7692308
#> NF1 1 1 0.7692308 0.7692308
#> PIK3CA 1 1 0.7692308 0.7692308
#> PTPRD 1 1 0.7692308 0.7692308
#> PTPRT 1 1 0.7692308 0.7692308
#> RB1 1 1 0.7692308 0.7692308
#> RBM10 1 1 0.7692308 0.7692308
#> SETBP1 1 1 0.7692308 0.7692308
#> SETD2 1 1 0.7692308 0.7692308
#> SMAD4 1 1 0.7692308 0.7692308
#> SMARCA4 1 1 0.7692308 0.7692308
#> STK11 1 1 0.7692308 0.7692308
#> TP53 1 1 0.7692308 0.7692308
#> U2AF1 1 1 0.7692308 0.7692308
#> TCGA-MP-A4TK-01 TCGA-NJ-A4YG-01 TCGA-NJ-A4YI-01 TCGA-NJ-A4YP-01
#> ARID1A 0.7692308 1 0.625 0.625
#> ATM 0.7692308 1 0.625 0.625
#> BRAF 0.7692308 1 0.625 0.625
#> CDKN2A 0.7692308 1 0.625 0.625
#> CMTR2 0.7692308 1 0.625 0.625
#> CTNNB1 0.7692308 1 0.625 0.625
#> EGFR 0.7692308 1 0.625 0.625
#> KEAP1 0.7692308 1 0.625 0.625
#> KRAS 0.7692308 1 0.625 0.625
#> MGA 0.7692308 1 0.625 0.625
#> NF1 0.7692308 1 0.625 0.625
#> PIK3CA 0.7692308 1 0.625 0.625
#> PTPRD 0.7692308 1 0.625 0.625
#> PTPRT 0.7692308 1 0.625 0.625
#> RB1 0.7692308 1 0.625 0.625
#> RBM10 0.7692308 1 0.625 0.625
#> SETBP1 0.7692308 1 0.625 0.625
#> SETD2 0.7692308 1 0.625 0.625
#> SMAD4 0.7692308 1 0.625 0.625
#> SMARCA4 0.7692308 1 0.625 0.625
#> STK11 0.7692308 1 0.625 0.625
#> TP53 0.7692308 1 0.625 0.625
#> U2AF1 0.7692308 1 0.625 0.625
#> TCGA-NJ-A4YQ-01 TCGA-NJ-A55O-01 TCGA-NJ-A55R-01 TCGA-05-4398-01
#> ARID1A 0.4 1 0.7692308 0.5263158
#> ATM 0.4 1 0.7692308 0.5263158
#> BRAF 0.4 1 0.7692308 0.5263158
#> CDKN2A 0.4 1 0.7692308 0.5263158
#> CMTR2 0.4 1 0.7692308 0.5263158
#> CTNNB1 0.4 1 0.7692308 0.5263158
#> EGFR 0.4 1 0.7692308 0.5263158
#> KEAP1 0.4 1 0.7692308 0.5263158
#> KRAS 0.4 1 0.7692308 0.5263158
#> MGA 0.4 1 0.7692308 0.5263158
#> NF1 0.4 1 0.7692308 0.5263158
#> PIK3CA 0.4 1 0.7692308 0.5263158
#> PTPRD 0.4 1 0.7692308 0.5263158
#> PTPRT 0.4 1 0.7692308 0.5263158
#> RB1 0.4 1 0.7692308 0.5263158
#> RBM10 0.4 1 0.7692308 0.5263158
#> SETBP1 0.4 1 0.7692308 0.5263158
#> SETD2 0.4 1 0.7692308 0.5263158
#> SMAD4 0.4 1 0.7692308 0.5263158
#> SMARCA4 0.4 1 0.7692308 0.5263158
#> STK11 0.4 1 0.7692308 0.5263158
#> TP53 0.4 1 0.7692308 0.5263158
#> U2AF1 0.4 1 0.7692308 0.5263158
#> TCGA-05-4402-01 TCGA-05-4424-01 TCGA-05-4426-01 TCGA-05-4434-01
#> ARID1A 1 0.5263158 1 1
#> ATM 1 0.5263158 1 1
#> BRAF 1 0.5263158 1 1
#> CDKN2A 1 0.5263158 1 1
#> CMTR2 1 0.5263158 1 1
#> CTNNB1 1 0.5263158 1 1
#> EGFR 1 0.5263158 1 1
#> KEAP1 1 0.5263158 1 1
#> KRAS 1 0.5263158 1 1
#> MGA 1 0.5263158 1 1
#> NF1 1 0.5263158 1 1
#> PIK3CA 1 0.5263158 1 1
#> PTPRD 1 0.5263158 1 1
#> PTPRT 1 0.5263158 1 1
#> RB1 1 0.5263158 1 1
#> RBM10 1 0.5263158 1 1
#> SETBP1 1 0.5263158 1 1
#> SETD2 1 0.5263158 1 1
#> SMAD4 1 0.5263158 1 1
#> SMARCA4 1 0.5263158 1 1
#> STK11 1 0.5263158 1 1
#> TP53 1 0.5263158 1 1
#> U2AF1 1 0.5263158 1 1
#> TCGA-05-5715-01 TCGA-38-4626-01 TCGA-38-4628-01 TCGA-38-7271-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-38-A44F-01 TCGA-44-2655-01 TCGA-44-2659-01 TCGA-44-3398-01
#> ARID1A 1 1 0.625 1
#> ATM 1 1 0.625 1
#> BRAF 1 1 0.625 1
#> CDKN2A 1 1 0.625 1
#> CMTR2 1 1 0.625 1
#> CTNNB1 1 1 0.625 1
#> EGFR 1 1 0.625 1
#> KEAP1 1 1 0.625 1
#> KRAS 1 1 0.625 1
#> MGA 1 1 0.625 1
#> NF1 1 1 0.625 1
#> PIK3CA 1 1 0.625 1
#> PTPRD 1 1 0.625 1
#> PTPRT 1 1 0.625 1
#> RB1 1 1 0.625 1
#> RBM10 1 1 0.625 1
#> SETBP1 1 1 0.625 1
#> SETD2 1 1 0.625 1
#> SMAD4 1 1 0.625 1
#> SMARCA4 1 1 0.625 1
#> STK11 1 1 0.625 1
#> TP53 1 1 0.625 1
#> U2AF1 1 1 0.625 1
#> TCGA-44-3918-01 TCGA-44-3919-01 TCGA-44-4112-01 TCGA-44-5644-01
#> ARID1A 0.4545455 1 0.625 0.4545455
#> ATM 0.4545455 1 0.625 0.4545455
#> BRAF 0.4545455 1 0.625 0.4545455
#> CDKN2A 0.4545455 1 0.625 0.4545455
#> CMTR2 0.4545455 1 0.625 0.4545455
#> CTNNB1 0.4545455 1 0.625 0.4545455
#> EGFR 0.4545455 1 0.625 0.4545455
#> KEAP1 0.4545455 1 0.625 0.4545455
#> KRAS 0.4545455 1 0.625 0.4545455
#> MGA 0.4545455 1 0.625 0.4545455
#> NF1 0.4545455 1 0.625 0.4545455
#> PIK3CA 0.4545455 1 0.625 0.4545455
#> PTPRD 0.4545455 1 0.625 0.4545455
#> PTPRT 0.4545455 1 0.625 0.4545455
#> RB1 0.4545455 1 0.625 0.4545455
#> RBM10 0.4545455 1 0.625 0.4545455
#> SETBP1 0.4545455 1 0.625 0.4545455
#> SETD2 0.4545455 1 0.625 0.4545455
#> SMAD4 0.4545455 1 0.625 0.4545455
#> SMARCA4 0.4545455 1 0.625 0.4545455
#> STK11 0.4545455 1 0.625 0.4545455
#> TP53 0.4545455 1 0.625 0.4545455
#> U2AF1 0.4545455 1 0.625 0.4545455
#> TCGA-44-6148-01 TCGA-44-6778-01 TCGA-44-6779-01 TCGA-44-7660-01
#> ARID1A 1 0.7692308 1 0.7692308
#> ATM 1 0.7692308 1 0.7692308
#> BRAF 1 0.7692308 1 0.7692308
#> CDKN2A 1 0.7692308 1 0.7692308
#> CMTR2 1 0.7692308 1 0.7692308
#> CTNNB1 1 0.7692308 1 0.7692308
#> EGFR 1 0.7692308 1 0.7692308
#> KEAP1 1 0.7692308 1 0.7692308
#> KRAS 1 0.7692308 1 0.7692308
#> MGA 1 0.7692308 1 0.7692308
#> NF1 1 0.7692308 1 0.7692308
#> PIK3CA 1 0.7692308 1 0.7692308
#> PTPRD 1 0.7692308 1 0.7692308
#> PTPRT 1 0.7692308 1 0.7692308
#> RB1 1 0.7692308 1 0.7692308
#> RBM10 1 0.7692308 1 0.7692308
#> SETBP1 1 0.7692308 1 0.7692308
#> SETD2 1 0.7692308 1 0.7692308
#> SMAD4 1 0.7692308 1 0.7692308
#> SMARCA4 1 0.7692308 1 0.7692308
#> STK11 1 0.7692308 1 0.7692308
#> TP53 1 0.7692308 1 0.7692308
#> U2AF1 1 0.7692308 1 0.7692308
#> TCGA-44-7667-01 TCGA-44-7669-01 TCGA-44-A479-01 TCGA-44-A47B-01
#> ARID1A 0.625 0.625 0.7692308 1
#> ATM 0.625 0.625 0.7692308 1
#> BRAF 0.625 0.625 0.7692308 1
#> CDKN2A 0.625 0.625 0.7692308 1
#> CMTR2 0.625 0.625 0.7692308 1
#> CTNNB1 0.625 0.625 0.7692308 1
#> EGFR 0.625 0.625 0.7692308 1
#> KEAP1 0.625 0.625 0.7692308 1
#> KRAS 0.625 0.625 0.7692308 1
#> MGA 0.625 0.625 0.7692308 1
#> NF1 0.625 0.625 0.7692308 1
#> PIK3CA 0.625 0.625 0.7692308 1
#> PTPRD 0.625 0.625 0.7692308 1
#> PTPRT 0.625 0.625 0.7692308 1
#> RB1 0.625 0.625 0.7692308 1
#> RBM10 0.625 0.625 0.7692308 1
#> SETBP1 0.625 0.625 0.7692308 1
#> SETD2 0.625 0.625 0.7692308 1
#> SMAD4 0.625 0.625 0.7692308 1
#> SMARCA4 0.625 0.625 0.7692308 1
#> STK11 0.625 0.625 0.7692308 1
#> TP53 0.625 0.625 0.7692308 1
#> U2AF1 0.625 0.625 0.7692308 1
#> TCGA-49-4487-01 TCGA-49-4501-01 TCGA-49-4512-01 TCGA-49-6742-01
#> ARID1A 0.7692308 1 1 0.7692308
#> ATM 0.7692308 1 1 0.7692308
#> BRAF 0.7692308 1 1 0.7692308
#> CDKN2A 0.7692308 1 1 0.7692308
#> CMTR2 0.7692308 1 1 0.7692308
#> CTNNB1 0.7692308 1 1 0.7692308
#> EGFR 0.7692308 1 1 0.7692308
#> KEAP1 0.7692308 1 1 0.7692308
#> KRAS 0.7692308 1 1 0.7692308
#> MGA 0.7692308 1 1 0.7692308
#> NF1 0.7692308 1 1 0.7692308
#> PIK3CA 0.7692308 1 1 0.7692308
#> PTPRD 0.7692308 1 1 0.7692308
#> PTPRT 0.7692308 1 1 0.7692308
#> RB1 0.7692308 1 1 0.7692308
#> RBM10 0.7692308 1 1 0.7692308
#> SETBP1 0.7692308 1 1 0.7692308
#> SETD2 0.7692308 1 1 0.7692308
#> SMAD4 0.7692308 1 1 0.7692308
#> SMARCA4 0.7692308 1 1 0.7692308
#> STK11 0.7692308 1 1 0.7692308
#> TP53 0.7692308 1 1 0.7692308
#> U2AF1 0.7692308 1 1 0.7692308
#> TCGA-49-6743-01 TCGA-49-6761-01 TCGA-49-6767-01 TCGA-49-AAR0-01
#> ARID1A 0.5263158 0.7692308 0.625 1
#> ATM 0.5263158 0.7692308 0.625 1
#> BRAF 0.5263158 0.7692308 0.625 1
#> CDKN2A 0.5263158 0.7692308 0.625 1
#> CMTR2 0.5263158 0.7692308 0.625 1
#> CTNNB1 0.5263158 0.7692308 0.625 1
#> EGFR 0.5263158 0.7692308 0.625 1
#> KEAP1 0.5263158 0.7692308 0.625 1
#> KRAS 0.5263158 0.7692308 0.625 1
#> MGA 0.5263158 0.7692308 0.625 1
#> NF1 0.5263158 0.7692308 0.625 1
#> PIK3CA 0.5263158 0.7692308 0.625 1
#> PTPRD 0.5263158 0.7692308 0.625 1
#> PTPRT 0.5263158 0.7692308 0.625 1
#> RB1 0.5263158 0.7692308 0.625 1
#> RBM10 0.5263158 0.7692308 0.625 1
#> SETBP1 0.5263158 0.7692308 0.625 1
#> SETD2 0.5263158 0.7692308 0.625 1
#> SMAD4 0.5263158 0.7692308 0.625 1
#> SMARCA4 0.5263158 0.7692308 0.625 1
#> STK11 0.5263158 0.7692308 0.625 1
#> TP53 0.5263158 0.7692308 0.625 1
#> U2AF1 0.5263158 0.7692308 0.625 1
#> TCGA-49-AAR2-01 TCGA-49-AAR3-01 TCGA-49-AAR4-01 TCGA-49-AARR-01
#> ARID1A 0.7692308 1 0.625 1
#> ATM 0.7692308 1 0.625 1
#> BRAF 0.7692308 1 0.625 1
#> CDKN2A 0.7692308 1 0.625 1
#> CMTR2 0.7692308 1 0.625 1
#> CTNNB1 0.7692308 1 0.625 1
#> EGFR 0.7692308 1 0.625 1
#> KEAP1 0.7692308 1 0.625 1
#> KRAS 0.7692308 1 0.625 1
#> MGA 0.7692308 1 0.625 1
#> NF1 0.7692308 1 0.625 1
#> PIK3CA 0.7692308 1 0.625 1
#> PTPRD 0.7692308 1 0.625 1
#> PTPRT 0.7692308 1 0.625 1
#> RB1 0.7692308 1 0.625 1
#> RBM10 0.7692308 1 0.625 1
#> SETBP1 0.7692308 1 0.625 1
#> SETD2 0.7692308 1 0.625 1
#> SMAD4 0.7692308 1 0.625 1
#> SMARCA4 0.7692308 1 0.625 1
#> STK11 0.7692308 1 0.625 1
#> TP53 0.7692308 1 0.625 1
#> U2AF1 0.7692308 1 0.625 1
#> TCGA-50-5045-01 TCGA-50-5049-01 TCGA-50-5055-01 TCGA-50-5072-01
#> ARID1A 0.7692308 0.5263158 1 1
#> ATM 0.7692308 0.5263158 1 1
#> BRAF 0.7692308 0.5263158 1 1
#> CDKN2A 0.7692308 0.5263158 1 1
#> CMTR2 0.7692308 0.5263158 1 1
#> CTNNB1 0.7692308 0.5263158 1 1
#> EGFR 0.7692308 0.5263158 1 1
#> KEAP1 0.7692308 0.5263158 1 1
#> KRAS 0.7692308 0.5263158 1 1
#> MGA 0.7692308 0.5263158 1 1
#> NF1 0.7692308 0.5263158 1 1
#> PIK3CA 0.7692308 0.5263158 1 1
#> PTPRD 0.7692308 0.5263158 1 1
#> PTPRT 0.7692308 0.5263158 1 1
#> RB1 0.7692308 0.5263158 1 1
#> RBM10 0.7692308 0.5263158 1 1
#> SETBP1 0.7692308 0.5263158 1 1
#> SETD2 0.7692308 0.5263158 1 1
#> SMAD4 0.7692308 0.5263158 1 1
#> SMARCA4 0.7692308 0.5263158 1 1
#> STK11 0.7692308 0.5263158 1 1
#> TP53 0.7692308 0.5263158 1 1
#> U2AF1 0.7692308 0.5263158 1 1
#> TCGA-50-5931-01 TCGA-50-5935-01 TCGA-50-6590-01 TCGA-50-6597-01
#> ARID1A 0.7692308 1 0.4545455 1
#> ATM 0.7692308 1 0.4545455 1
#> BRAF 0.7692308 1 0.4545455 1
#> CDKN2A 0.7692308 1 0.4545455 1
#> CMTR2 0.7692308 1 0.4545455 1
#> CTNNB1 0.7692308 1 0.4545455 1
#> EGFR 0.7692308 1 0.4545455 1
#> KEAP1 0.7692308 1 0.4545455 1
#> KRAS 0.7692308 1 0.4545455 1
#> MGA 0.7692308 1 0.4545455 1
#> NF1 0.7692308 1 0.4545455 1
#> PIK3CA 0.7692308 1 0.4545455 1
#> PTPRD 0.7692308 1 0.4545455 1
#> PTPRT 0.7692308 1 0.4545455 1
#> RB1 0.7692308 1 0.4545455 1
#> RBM10 0.7692308 1 0.4545455 1
#> SETBP1 0.7692308 1 0.4545455 1
#> SETD2 0.7692308 1 0.4545455 1
#> SMAD4 0.7692308 1 0.4545455 1
#> SMARCA4 0.7692308 1 0.4545455 1
#> STK11 0.7692308 1 0.4545455 1
#> TP53 0.7692308 1 0.4545455 1
#> U2AF1 0.7692308 1 0.4545455 1
#> TCGA-50-8457-01 TCGA-53-7624-01 TCGA-55-1594-01 TCGA-55-5899-01
#> ARID1A 1 0.5263158 1 0.625
#> ATM 1 0.5263158 1 0.625
#> BRAF 1 0.5263158 1 0.625
#> CDKN2A 1 0.5263158 1 0.625
#> CMTR2 1 0.5263158 1 0.625
#> CTNNB1 1 0.5263158 1 0.625
#> EGFR 1 0.5263158 1 0.625
#> KEAP1 1 0.5263158 1 0.625
#> KRAS 1 0.5263158 1 0.625
#> MGA 1 0.5263158 1 0.625
#> NF1 1 0.5263158 1 0.625
#> PIK3CA 1 0.5263158 1 0.625
#> PTPRD 1 0.5263158 1 0.625
#> PTPRT 1 0.5263158 1 0.625
#> RB1 1 0.5263158 1 0.625
#> RBM10 1 0.5263158 1 0.625
#> SETBP1 1 0.5263158 1 0.625
#> SETD2 1 0.5263158 1 0.625
#> SMAD4 1 0.5263158 1 0.625
#> SMARCA4 1 0.5263158 1 0.625
#> STK11 1 0.5263158 1 0.625
#> TP53 1 0.5263158 1 0.625
#> U2AF1 1 0.5263158 1 0.625
#> TCGA-55-6543-01 TCGA-55-6712-01 TCGA-55-6971-01 TCGA-55-6972-01
#> ARID1A 1 1 0.7692308 0.7692308
#> ATM 1 1 0.7692308 0.7692308
#> BRAF 1 1 0.7692308 0.7692308
#> CDKN2A 1 1 0.7692308 0.7692308
#> CMTR2 1 1 0.7692308 0.7692308
#> CTNNB1 1 1 0.7692308 0.7692308
#> EGFR 1 1 0.7692308 0.7692308
#> KEAP1 1 1 0.7692308 0.7692308
#> KRAS 1 1 0.7692308 0.7692308
#> MGA 1 1 0.7692308 0.7692308
#> NF1 1 1 0.7692308 0.7692308
#> PIK3CA 1 1 0.7692308 0.7692308
#> PTPRD 1 1 0.7692308 0.7692308
#> PTPRT 1 1 0.7692308 0.7692308
#> RB1 1 1 0.7692308 0.7692308
#> RBM10 1 1 0.7692308 0.7692308
#> SETBP1 1 1 0.7692308 0.7692308
#> SETD2 1 1 0.7692308 0.7692308
#> SMAD4 1 1 0.7692308 0.7692308
#> SMARCA4 1 1 0.7692308 0.7692308
#> STK11 1 1 0.7692308 0.7692308
#> TP53 1 1 0.7692308 0.7692308
#> U2AF1 1 1 0.7692308 0.7692308
#> TCGA-55-6978-01 TCGA-55-6980-01 TCGA-55-6982-01 TCGA-55-6985-01
#> ARID1A 1 1 0.7692308 0.625
#> ATM 1 1 0.7692308 0.625
#> BRAF 1 1 0.7692308 0.625
#> CDKN2A 1 1 0.7692308 0.625
#> CMTR2 1 1 0.7692308 0.625
#> CTNNB1 1 1 0.7692308 0.625
#> EGFR 1 1 0.7692308 0.625
#> KEAP1 1 1 0.7692308 0.625
#> KRAS 1 1 0.7692308 0.625
#> MGA 1 1 0.7692308 0.625
#> NF1 1 1 0.7692308 0.625
#> PIK3CA 1 1 0.7692308 0.625
#> PTPRD 1 1 0.7692308 0.625
#> PTPRT 1 1 0.7692308 0.625
#> RB1 1 1 0.7692308 0.625
#> RBM10 1 1 0.7692308 0.625
#> SETBP1 1 1 0.7692308 0.625
#> SETD2 1 1 0.7692308 0.625
#> SMAD4 1 1 0.7692308 0.625
#> SMARCA4 1 1 0.7692308 0.625
#> STK11 1 1 0.7692308 0.625
#> TP53 1 1 0.7692308 0.625
#> U2AF1 1 1 0.7692308 0.625
#> TCGA-55-6986-01 TCGA-55-6987-01 TCGA-55-7574-01 TCGA-55-8087-01
#> ARID1A 1 0.7692308 0.7692308 1
#> ATM 1 0.7692308 0.7692308 1
#> BRAF 1 0.7692308 0.7692308 1
#> CDKN2A 1 0.7692308 0.7692308 1
#> CMTR2 1 0.7692308 0.7692308 1
#> CTNNB1 1 0.7692308 0.7692308 1
#> EGFR 1 0.7692308 0.7692308 1
#> KEAP1 1 0.7692308 0.7692308 1
#> KRAS 1 0.7692308 0.7692308 1
#> MGA 1 0.7692308 0.7692308 1
#> NF1 1 0.7692308 0.7692308 1
#> PIK3CA 1 0.7692308 0.7692308 1
#> PTPRD 1 0.7692308 0.7692308 1
#> PTPRT 1 0.7692308 0.7692308 1
#> RB1 1 0.7692308 0.7692308 1
#> RBM10 1 0.7692308 0.7692308 1
#> SETBP1 1 0.7692308 0.7692308 1
#> SETD2 1 0.7692308 0.7692308 1
#> SMAD4 1 0.7692308 0.7692308 1
#> SMARCA4 1 0.7692308 0.7692308 1
#> STK11 1 0.7692308 0.7692308 1
#> TP53 1 0.7692308 0.7692308 1
#> U2AF1 1 0.7692308 0.7692308 1
#> TCGA-55-8091-01 TCGA-55-8204-01 TCGA-55-8206-01 TCGA-55-8507-01
#> ARID1A 1 1 1 0.4545455
#> ATM 1 1 1 0.4545455
#> BRAF 1 1 1 0.4545455
#> CDKN2A 1 1 1 0.4545455
#> CMTR2 1 1 1 0.4545455
#> CTNNB1 1 1 1 0.4545455
#> EGFR 1 1 1 0.4545455
#> KEAP1 1 1 1 0.4545455
#> KRAS 1 1 1 0.4545455
#> MGA 1 1 1 0.4545455
#> NF1 1 1 1 0.4545455
#> PIK3CA 1 1 1 0.4545455
#> PTPRD 1 1 1 0.4545455
#> PTPRT 1 1 1 0.4545455
#> RB1 1 1 1 0.4545455
#> RBM10 1 1 1 0.4545455
#> SETBP1 1 1 1 0.4545455
#> SETD2 1 1 1 0.4545455
#> SMAD4 1 1 1 0.4545455
#> SMARCA4 1 1 1 0.4545455
#> STK11 1 1 1 0.4545455
#> TP53 1 1 1 0.4545455
#> U2AF1 1 1 1 0.4545455
#> TCGA-55-8510-01 TCGA-55-8513-01 TCGA-55-8619-01 TCGA-55-8621-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-55-A4DF-01 TCGA-62-8397-01 TCGA-62-A46O-01 TCGA-62-A46P-01
#> ARID1A 0.5263158 1 0.4545455 0.7692308
#> ATM 0.5263158 1 0.4545455 0.7692308
#> BRAF 0.5263158 1 0.4545455 0.7692308
#> CDKN2A 0.5263158 1 0.4545455 0.7692308
#> CMTR2 0.5263158 1 0.4545455 0.7692308
#> CTNNB1 0.5263158 1 0.4545455 0.7692308
#> EGFR 0.5263158 1 0.4545455 0.7692308
#> KEAP1 0.5263158 1 0.4545455 0.7692308
#> KRAS 0.5263158 1 0.4545455 0.7692308
#> MGA 0.5263158 1 0.4545455 0.7692308
#> NF1 0.5263158 1 0.4545455 0.7692308
#> PIK3CA 0.5263158 1 0.4545455 0.7692308
#> PTPRD 0.5263158 1 0.4545455 0.7692308
#> PTPRT 0.5263158 1 0.4545455 0.7692308
#> RB1 0.5263158 1 0.4545455 0.7692308
#> RBM10 0.5263158 1 0.4545455 0.7692308
#> SETBP1 0.5263158 1 0.4545455 0.7692308
#> SETD2 0.5263158 1 0.4545455 0.7692308
#> SMAD4 0.5263158 1 0.4545455 0.7692308
#> SMARCA4 0.5263158 1 0.4545455 0.7692308
#> STK11 0.5263158 1 0.4545455 0.7692308
#> TP53 0.5263158 1 0.4545455 0.7692308
#> U2AF1 0.5263158 1 0.4545455 0.7692308
#> TCGA-62-A46Y-01 TCGA-64-5779-01 TCGA-64-5781-01 TCGA-69-7760-01
#> ARID1A 1 0.7692308 0.4 1
#> ATM 1 0.7692308 0.4 1
#> BRAF 1 0.7692308 0.4 1
#> CDKN2A 1 0.7692308 0.4 1
#> CMTR2 1 0.7692308 0.4 1
#> CTNNB1 1 0.7692308 0.4 1
#> EGFR 1 0.7692308 0.4 1
#> KEAP1 1 0.7692308 0.4 1
#> KRAS 1 0.7692308 0.4 1
#> MGA 1 0.7692308 0.4 1
#> NF1 1 0.7692308 0.4 1
#> PIK3CA 1 0.7692308 0.4 1
#> PTPRD 1 0.7692308 0.4 1
#> PTPRT 1 0.7692308 0.4 1
#> RB1 1 0.7692308 0.4 1
#> RBM10 1 0.7692308 0.4 1
#> SETBP1 1 0.7692308 0.4 1
#> SETD2 1 0.7692308 0.4 1
#> SMAD4 1 0.7692308 0.4 1
#> SMARCA4 1 0.7692308 0.4 1
#> STK11 1 0.7692308 0.4 1
#> TP53 1 0.7692308 0.4 1
#> U2AF1 1 0.7692308 0.4 1
#> TCGA-69-7761-01 TCGA-69-7763-01 TCGA-69-7764-01 TCGA-69-7979-01
#> ARID1A 1 1 1 0.3571429
#> ATM 1 1 1 0.3571429
#> BRAF 1 1 1 0.3571429
#> CDKN2A 1 1 1 0.3571429
#> CMTR2 1 1 1 0.3571429
#> CTNNB1 1 1 1 0.3571429
#> EGFR 1 1 1 0.3571429
#> KEAP1 1 1 1 0.3571429
#> KRAS 1 1 1 0.3571429
#> MGA 1 1 1 0.3571429
#> NF1 1 1 1 0.3571429
#> PIK3CA 1 1 1 0.3571429
#> PTPRD 1 1 1 0.3571429
#> PTPRT 1 1 1 0.3571429
#> RB1 1 1 1 0.3571429
#> RBM10 1 1 1 0.3571429
#> SETBP1 1 1 1 0.3571429
#> SETD2 1 1 1 0.3571429
#> SMAD4 1 1 1 0.3571429
#> SMARCA4 1 1 1 0.3571429
#> STK11 1 1 1 0.3571429
#> TP53 1 1 1 0.3571429
#> U2AF1 1 1 1 0.3571429
#> TCGA-69-8255-01 TCGA-69-A59K-01 TCGA-71-6725-01 TCGA-73-4659-01
#> ARID1A 0.7692308 0.625 1 1
#> ATM 0.7692308 0.625 1 1
#> BRAF 0.7692308 0.625 1 1
#> CDKN2A 0.7692308 0.625 1 1
#> CMTR2 0.7692308 0.625 1 1
#> CTNNB1 0.7692308 0.625 1 1
#> EGFR 0.7692308 0.625 1 1
#> KEAP1 0.7692308 0.625 1 1
#> KRAS 0.7692308 0.625 1 1
#> MGA 0.7692308 0.625 1 1
#> NF1 0.7692308 0.625 1 1
#> PIK3CA 0.7692308 0.625 1 1
#> PTPRD 0.7692308 0.625 1 1
#> PTPRT 0.7692308 0.625 1 1
#> RB1 0.7692308 0.625 1 1
#> RBM10 0.7692308 0.625 1 1
#> SETBP1 0.7692308 0.625 1 1
#> SETD2 0.7692308 0.625 1 1
#> SMAD4 0.7692308 0.625 1 1
#> SMARCA4 0.7692308 0.625 1 1
#> STK11 0.7692308 0.625 1 1
#> TP53 0.7692308 0.625 1 1
#> U2AF1 0.7692308 0.625 1 1
#> TCGA-73-4668-01 TCGA-73-4675-01 TCGA-75-5122-01 TCGA-75-5125-01
#> ARID1A 0.625 1 1 1
#> ATM 0.625 1 1 1
#> BRAF 0.625 1 1 1
#> CDKN2A 0.625 1 1 1
#> CMTR2 0.625 1 1 1
#> CTNNB1 0.625 1 1 1
#> EGFR 0.625 1 1 1
#> KEAP1 0.625 1 1 1
#> KRAS 0.625 1 1 1
#> MGA 0.625 1 1 1
#> NF1 0.625 1 1 1
#> PIK3CA 0.625 1 1 1
#> PTPRD 0.625 1 1 1
#> PTPRT 0.625 1 1 1
#> RB1 0.625 1 1 1
#> RBM10 0.625 1 1 1
#> SETBP1 0.625 1 1 1
#> SETD2 0.625 1 1 1
#> SMAD4 0.625 1 1 1
#> SMARCA4 0.625 1 1 1
#> STK11 0.625 1 1 1
#> TP53 0.625 1 1 1
#> U2AF1 0.625 1 1 1
#> TCGA-75-6203-01 TCGA-75-6205-01 TCGA-75-6207-01 TCGA-75-6212-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-75-7025-01 TCGA-75-7031-01 TCGA-78-7154-01 TCGA-78-7156-01
#> ARID1A 1 1 0.7692308 0.7692308
#> ATM 1 1 0.7692308 0.7692308
#> BRAF 1 1 0.7692308 0.7692308
#> CDKN2A 1 1 0.7692308 0.7692308
#> CMTR2 1 1 0.7692308 0.7692308
#> CTNNB1 1 1 0.7692308 0.7692308
#> EGFR 1 1 0.7692308 0.7692308
#> KEAP1 1 1 0.7692308 0.7692308
#> KRAS 1 1 0.7692308 0.7692308
#> MGA 1 1 0.7692308 0.7692308
#> NF1 1 1 0.7692308 0.7692308
#> PIK3CA 1 1 0.7692308 0.7692308
#> PTPRD 1 1 0.7692308 0.7692308
#> PTPRT 1 1 0.7692308 0.7692308
#> RB1 1 1 0.7692308 0.7692308
#> RBM10 1 1 0.7692308 0.7692308
#> SETBP1 1 1 0.7692308 0.7692308
#> SETD2 1 1 0.7692308 0.7692308
#> SMAD4 1 1 0.7692308 0.7692308
#> SMARCA4 1 1 0.7692308 0.7692308
#> STK11 1 1 0.7692308 0.7692308
#> TP53 1 1 0.7692308 0.7692308
#> U2AF1 1 1 0.7692308 0.7692308
#> TCGA-78-7162-01 TCGA-78-7163-01 TCGA-78-7535-01 TCGA-78-7536-01
#> ARID1A 1 1 1 0.5263158
#> ATM 1 1 1 0.5263158
#> BRAF 1 1 1 0.5263158
#> CDKN2A 1 1 1 0.5263158
#> CMTR2 1 1 1 0.5263158
#> CTNNB1 1 1 1 0.5263158
#> EGFR 1 1 1 0.5263158
#> KEAP1 1 1 1 0.5263158
#> KRAS 1 1 1 0.5263158
#> MGA 1 1 1 0.5263158
#> NF1 1 1 1 0.5263158
#> PIK3CA 1 1 1 0.5263158
#> PTPRD 1 1 1 0.5263158
#> PTPRT 1 1 1 0.5263158
#> RB1 1 1 1 0.5263158
#> RBM10 1 1 1 0.5263158
#> SETBP1 1 1 1 0.5263158
#> SETD2 1 1 1 0.5263158
#> SMAD4 1 1 1 0.5263158
#> SMARCA4 1 1 1 0.5263158
#> STK11 1 1 1 0.5263158
#> TP53 1 1 1 0.5263158
#> U2AF1 1 1 1 0.5263158
#> TCGA-78-7542-01 TCGA-78-8648-01 TCGA-80-5611-01 TCGA-86-6562-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-86-7701-01 TCGA-86-7955-01 TCGA-86-8073-01 TCGA-86-8358-01
#> ARID1A 0.7692308 0.7692308 0.3571429 0.4545455
#> ATM 0.7692308 0.7692308 0.3571429 0.4545455
#> BRAF 0.7692308 0.7692308 0.3571429 0.4545455
#> CDKN2A 0.7692308 0.7692308 0.3571429 0.4545455
#> CMTR2 0.7692308 0.7692308 0.3571429 0.4545455
#> CTNNB1 0.7692308 0.7692308 0.3571429 0.4545455
#> EGFR 0.7692308 0.7692308 0.3571429 0.4545455
#> KEAP1 0.7692308 0.7692308 0.3571429 0.4545455
#> KRAS 0.7692308 0.7692308 0.3571429 0.4545455
#> MGA 0.7692308 0.7692308 0.3571429 0.4545455
#> NF1 0.7692308 0.7692308 0.3571429 0.4545455
#> PIK3CA 0.7692308 0.7692308 0.3571429 0.4545455
#> PTPRD 0.7692308 0.7692308 0.3571429 0.4545455
#> PTPRT 0.7692308 0.7692308 0.3571429 0.4545455
#> RB1 0.7692308 0.7692308 0.3571429 0.4545455
#> RBM10 0.7692308 0.7692308 0.3571429 0.4545455
#> SETBP1 0.7692308 0.7692308 0.3571429 0.4545455
#> SETD2 0.7692308 0.7692308 0.3571429 0.4545455
#> SMAD4 0.7692308 0.7692308 0.3571429 0.4545455
#> SMARCA4 0.7692308 0.7692308 0.3571429 0.4545455
#> STK11 0.7692308 0.7692308 0.3571429 0.4545455
#> TP53 0.7692308 0.7692308 0.3571429 0.4545455
#> U2AF1 0.7692308 0.7692308 0.3571429 0.4545455
#> TCGA-86-8669-01 TCGA-86-8671-01 TCGA-86-8672-01 TCGA-86-A4P8-01
#> ARID1A 1 1 0.7692308 1
#> ATM 1 1 0.7692308 1
#> BRAF 1 1 0.7692308 1
#> CDKN2A 1 1 0.7692308 1
#> CMTR2 1 1 0.7692308 1
#> CTNNB1 1 1 0.7692308 1
#> EGFR 1 1 0.7692308 1
#> KEAP1 1 1 0.7692308 1
#> KRAS 1 1 0.7692308 1
#> MGA 1 1 0.7692308 1
#> NF1 1 1 0.7692308 1
#> PIK3CA 1 1 0.7692308 1
#> PTPRD 1 1 0.7692308 1
#> PTPRT 1 1 0.7692308 1
#> RB1 1 1 0.7692308 1
#> RBM10 1 1 0.7692308 1
#> SETBP1 1 1 0.7692308 1
#> SETD2 1 1 0.7692308 1
#> SMAD4 1 1 0.7692308 1
#> SMARCA4 1 1 0.7692308 1
#> STK11 1 1 0.7692308 1
#> TP53 1 1 0.7692308 1
#> U2AF1 1 1 0.7692308 1
#> TCGA-91-6831-01 TCGA-91-7771-01 TCGA-91-8496-01 TCGA-91-8497-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-91-8499-01 TCGA-91-A4BC-01 TCGA-93-A4JQ-01 TCGA-95-8039-01
#> ARID1A 0.7692308 0.625 1 1
#> ATM 0.7692308 0.625 1 1
#> BRAF 0.7692308 0.625 1 1
#> CDKN2A 0.7692308 0.625 1 1
#> CMTR2 0.7692308 0.625 1 1
#> CTNNB1 0.7692308 0.625 1 1
#> EGFR 0.7692308 0.625 1 1
#> KEAP1 0.7692308 0.625 1 1
#> KRAS 0.7692308 0.625 1 1
#> MGA 0.7692308 0.625 1 1
#> NF1 0.7692308 0.625 1 1
#> PIK3CA 0.7692308 0.625 1 1
#> PTPRD 0.7692308 0.625 1 1
#> PTPRT 0.7692308 0.625 1 1
#> RB1 0.7692308 0.625 1 1
#> RBM10 0.7692308 0.625 1 1
#> SETBP1 0.7692308 0.625 1 1
#> SETD2 0.7692308 0.625 1 1
#> SMAD4 0.7692308 0.625 1 1
#> SMARCA4 0.7692308 0.625 1 1
#> STK11 0.7692308 0.625 1 1
#> TP53 0.7692308 0.625 1 1
#> U2AF1 0.7692308 0.625 1 1
#> TCGA-95-8494-01 TCGA-97-7547-01 TCGA-97-7552-01 TCGA-97-8172-01
#> ARID1A 1 1 1 0.7692308
#> ATM 1 1 1 0.7692308
#> BRAF 1 1 1 0.7692308
#> CDKN2A 1 1 1 0.7692308
#> CMTR2 1 1 1 0.7692308
#> CTNNB1 1 1 1 0.7692308
#> EGFR 1 1 1 0.7692308
#> KEAP1 1 1 1 0.7692308
#> KRAS 1 1 1 0.7692308
#> MGA 1 1 1 0.7692308
#> NF1 1 1 1 0.7692308
#> PIK3CA 1 1 1 0.7692308
#> PTPRD 1 1 1 0.7692308
#> PTPRT 1 1 1 0.7692308
#> RB1 1 1 1 0.7692308
#> RBM10 1 1 1 0.7692308
#> SETBP1 1 1 1 0.7692308
#> SETD2 1 1 1 0.7692308
#> SMAD4 1 1 1 0.7692308
#> SMARCA4 1 1 1 0.7692308
#> STK11 1 1 1 0.7692308
#> TP53 1 1 1 0.7692308
#> U2AF1 1 1 1 0.7692308
#> TCGA-97-8552-01 TCGA-97-A4M2-01 TCGA-97-A4M6-01 TCGA-99-7458-01
#> ARID1A 1 1 1 0.625
#> ATM 1 1 1 0.625
#> BRAF 1 1 1 0.625
#> CDKN2A 1 1 1 0.625
#> CMTR2 1 1 1 0.625
#> CTNNB1 1 1 1 0.625
#> EGFR 1 1 1 0.625
#> KEAP1 1 1 1 0.625
#> KRAS 1 1 1 0.625
#> MGA 1 1 1 0.625
#> NF1 1 1 1 0.625
#> PIK3CA 1 1 1 0.625
#> PTPRD 1 1 1 0.625
#> PTPRT 1 1 1 0.625
#> RB1 1 1 1 0.625
#> RBM10 1 1 1 0.625
#> SETBP1 1 1 1 0.625
#> SETD2 1 1 1 0.625
#> SMAD4 1 1 1 0.625
#> SMARCA4 1 1 1 0.625
#> STK11 1 1 1 0.625
#> TP53 1 1 1 0.625
#> U2AF1 1 1 1 0.625
#> TCGA-99-AA5R-01 TCGA-J2-8192-01 TCGA-J2-A4AE-01 TCGA-L4-A4E6-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-MP-A4T6-01 TCGA-MP-A4TC-01 TCGA-MP-A4TH-01 TCGA-MP-A4TJ-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-MP-A5C7-01 TCGA-NJ-A4YF-01 TCGA-NJ-A55A-01 TCGA-NJ-A7XG-01
#> ARID1A 1 0.625 1 1
#> ATM 1 0.625 1 1
#> BRAF 1 0.625 1 1
#> CDKN2A 1 0.625 1 1
#> CMTR2 1 0.625 1 1
#> CTNNB1 1 0.625 1 1
#> EGFR 1 0.625 1 1
#> KEAP1 1 0.625 1 1
#> KRAS 1 0.625 1 1
#> MGA 1 0.625 1 1
#> NF1 1 0.625 1 1
#> PIK3CA 1 0.625 1 1
#> PTPRD 1 0.625 1 1
#> PTPRT 1 0.625 1 1
#> RB1 1 0.625 1 1
#> RBM10 1 0.625 1 1
#> SETBP1 1 0.625 1 1
#> SETD2 1 0.625 1 1
#> SMAD4 1 0.625 1 1
#> SMARCA4 1 0.625 1 1
#> STK11 1 0.625 1 1
#> TP53 1 0.625 1 1
#> U2AF1 1 0.625 1 1
#> TCGA-O1-A52J-01 TCGA-S2-AA1A-01
#> ARID1A 1 1
#> ATM 1 1
#> BRAF 1 1
#> CDKN2A 1 1
#> CMTR2 1 1
#> CTNNB1 1 1
#> EGFR 1 1
#> KEAP1 1 1
#> KRAS 1 1
#> MGA 1 1
#> NF1 1 1
#> PIK3CA 1 1
#> PTPRD 1 1
#> PTPRT 1 1
#> RB1 1 1
#> RBM10 1 1
#> SETBP1 1 1
#> SETD2 1 1
#> SMAD4 1 1
#> SMARCA4 1 1
#> STK11 1 1
#> TP53 1 1
#> U2AF1 1 1
#>
#>
#> $W
#> TCGA-05-4244-01 TCGA-05-4249-01 TCGA-05-4250-01 TCGA-05-4382-01
#> ARID1A 1 0.7692308 0.7692308 0.3225806
#> ATM 1 0.7692308 0.7692308 0.3225806
#> BRAF 1 0.7692308 0.7692308 0.3225806
#> CDKN2A 1 0.7692308 0.7692308 0.3225806
#> CMTR2 1 0.7692308 0.7692308 0.3225806
#> CTNNB1 1 0.7692308 0.7692308 0.3225806
#> EGFR 1 0.7692308 0.7692308 0.3225806
#> KEAP1 1 0.7692308 0.7692308 0.3225806
#> KRAS 1 0.7692308 0.7692308 0.3225806
#> MGA 1 0.7692308 0.7692308 0.3225806
#> NF1 1 0.7692308 0.7692308 0.3225806
#> PIK3CA 1 0.7692308 0.7692308 0.3225806
#> PTPRD 1 0.7692308 0.7692308 0.3225806
#> PTPRT 1 0.7692308 0.7692308 0.3225806
#> RB1 1 0.7692308 0.7692308 0.3225806
#> RBM10 1 0.7692308 0.7692308 0.3225806
#> SETBP1 1 0.7692308 0.7692308 0.3225806
#> SETD2 1 0.7692308 0.7692308 0.3225806
#> SMAD4 1 0.7692308 0.7692308 0.3225806
#> SMARCA4 1 0.7692308 0.7692308 0.3225806
#> STK11 1 0.7692308 0.7692308 0.3225806
#> TP53 1 0.7692308 0.7692308 0.3225806
#> U2AF1 1 0.7692308 0.7692308 0.3225806
#> TCGA-05-4384-01 TCGA-05-4389-01 TCGA-05-4390-01 TCGA-05-4395-01
#> ARID1A 1 0.7692308 0.625 0.7692308
#> ATM 1 0.7692308 0.625 0.7692308
#> BRAF 1 0.7692308 0.625 0.7692308
#> CDKN2A 1 0.7692308 0.625 0.7692308
#> CMTR2 1 0.7692308 0.625 0.7692308
#> CTNNB1 1 0.7692308 0.625 0.7692308
#> EGFR 1 0.7692308 0.625 0.7692308
#> KEAP1 1 0.7692308 0.625 0.7692308
#> KRAS 1 0.7692308 0.625 0.7692308
#> MGA 1 0.7692308 0.625 0.7692308
#> NF1 1 0.7692308 0.625 0.7692308
#> PIK3CA 1 0.7692308 0.625 0.7692308
#> PTPRD 1 0.7692308 0.625 0.7692308
#> PTPRT 1 0.7692308 0.625 0.7692308
#> RB1 1 0.7692308 0.625 0.7692308
#> RBM10 1 0.7692308 0.625 0.7692308
#> SETBP1 1 0.7692308 0.625 0.7692308
#> SETD2 1 0.7692308 0.625 0.7692308
#> SMAD4 1 0.7692308 0.625 0.7692308
#> SMARCA4 1 0.7692308 0.625 0.7692308
#> STK11 1 0.7692308 0.625 0.7692308
#> TP53 1 0.7692308 0.625 0.7692308
#> U2AF1 1 0.7692308 0.625 0.7692308
#> TCGA-05-4396-01 TCGA-05-4397-01 TCGA-05-4403-01 TCGA-05-4405-01
#> ARID1A 0.3571429 0.5263158 1 0.7692308
#> ATM 0.3571429 0.5263158 1 0.7692308
#> BRAF 0.3571429 0.5263158 1 0.7692308
#> CDKN2A 0.3571429 0.5263158 1 0.7692308
#> CMTR2 0.3571429 0.5263158 1 0.7692308
#> CTNNB1 0.3571429 0.5263158 1 0.7692308
#> EGFR 0.3571429 0.5263158 1 0.7692308
#> KEAP1 0.3571429 0.5263158 1 0.7692308
#> KRAS 0.3571429 0.5263158 1 0.7692308
#> MGA 0.3571429 0.5263158 1 0.7692308
#> NF1 0.3571429 0.5263158 1 0.7692308
#> PIK3CA 0.3571429 0.5263158 1 0.7692308
#> PTPRD 0.3571429 0.5263158 1 0.7692308
#> PTPRT 0.3571429 0.5263158 1 0.7692308
#> RB1 0.3571429 0.5263158 1 0.7692308
#> RBM10 0.3571429 0.5263158 1 0.7692308
#> SETBP1 0.3571429 0.5263158 1 0.7692308
#> SETD2 0.3571429 0.5263158 1 0.7692308
#> SMAD4 0.3571429 0.5263158 1 0.7692308
#> SMARCA4 0.3571429 0.5263158 1 0.7692308
#> STK11 0.3571429 0.5263158 1 0.7692308
#> TP53 0.3571429 0.5263158 1 0.7692308
#> U2AF1 0.3571429 0.5263158 1 0.7692308
#> TCGA-05-4410-01 TCGA-05-4415-01 TCGA-05-4417-01 TCGA-05-4418-01
#> ARID1A 0.4 1 0.7692308 0.7692308
#> ATM 0.4 1 0.7692308 0.7692308
#> BRAF 0.4 1 0.7692308 0.7692308
#> CDKN2A 0.4 1 0.7692308 0.7692308
#> CMTR2 0.4 1 0.7692308 0.7692308
#> CTNNB1 0.4 1 0.7692308 0.7692308
#> EGFR 0.4 1 0.7692308 0.7692308
#> KEAP1 0.4 1 0.7692308 0.7692308
#> KRAS 0.4 1 0.7692308 0.7692308
#> MGA 0.4 1 0.7692308 0.7692308
#> NF1 0.4 1 0.7692308 0.7692308
#> PIK3CA 0.4 1 0.7692308 0.7692308
#> PTPRD 0.4 1 0.7692308 0.7692308
#> PTPRT 0.4 1 0.7692308 0.7692308
#> RB1 0.4 1 0.7692308 0.7692308
#> RBM10 0.4 1 0.7692308 0.7692308
#> SETBP1 0.4 1 0.7692308 0.7692308
#> SETD2 0.4 1 0.7692308 0.7692308
#> SMAD4 0.4 1 0.7692308 0.7692308
#> SMARCA4 0.4 1 0.7692308 0.7692308
#> STK11 0.4 1 0.7692308 0.7692308
#> TP53 0.4 1 0.7692308 0.7692308
#> U2AF1 0.4 1 0.7692308 0.7692308
#> TCGA-05-4420-01 TCGA-05-4422-01 TCGA-05-4425-01 TCGA-05-4427-01
#> ARID1A 0.7692308 1 1 0.4545455
#> ATM 0.7692308 1 1 0.4545455
#> BRAF 0.7692308 1 1 0.4545455
#> CDKN2A 0.7692308 1 1 0.4545455
#> CMTR2 0.7692308 1 1 0.4545455
#> CTNNB1 0.7692308 1 1 0.4545455
#> EGFR 0.7692308 1 1 0.4545455
#> KEAP1 0.7692308 1 1 0.4545455
#> KRAS 0.7692308 1 1 0.4545455
#> MGA 0.7692308 1 1 0.4545455
#> NF1 0.7692308 1 1 0.4545455
#> PIK3CA 0.7692308 1 1 0.4545455
#> PTPRD 0.7692308 1 1 0.4545455
#> PTPRT 0.7692308 1 1 0.4545455
#> RB1 0.7692308 1 1 0.4545455
#> RBM10 0.7692308 1 1 0.4545455
#> SETBP1 0.7692308 1 1 0.4545455
#> SETD2 0.7692308 1 1 0.4545455
#> SMAD4 0.7692308 1 1 0.4545455
#> SMARCA4 0.7692308 1 1 0.4545455
#> STK11 0.7692308 1 1 0.4545455
#> TP53 0.7692308 1 1 0.4545455
#> U2AF1 0.7692308 1 1 0.4545455
#> TCGA-05-4430-01 TCGA-05-4432-01 TCGA-05-4433-01 TCGA-05-5423-01
#> ARID1A 0.7692308 0.625 1 1
#> ATM 0.7692308 0.625 1 1
#> BRAF 0.7692308 0.625 1 1
#> CDKN2A 0.7692308 0.625 1 1
#> CMTR2 0.7692308 0.625 1 1
#> CTNNB1 0.7692308 0.625 1 1
#> EGFR 0.7692308 0.625 1 1
#> KEAP1 0.7692308 0.625 1 1
#> KRAS 0.7692308 0.625 1 1
#> MGA 0.7692308 0.625 1 1
#> NF1 0.7692308 0.625 1 1
#> PIK3CA 0.7692308 0.625 1 1
#> PTPRD 0.7692308 0.625 1 1
#> PTPRT 0.7692308 0.625 1 1
#> RB1 0.7692308 0.625 1 1
#> RBM10 0.7692308 0.625 1 1
#> SETBP1 0.7692308 0.625 1 1
#> SETD2 0.7692308 0.625 1 1
#> SMAD4 0.7692308 0.625 1 1
#> SMARCA4 0.7692308 0.625 1 1
#> STK11 0.7692308 0.625 1 1
#> TP53 0.7692308 0.625 1 1
#> U2AF1 0.7692308 0.625 1 1
#> TCGA-05-5425-01 TCGA-05-5428-01 TCGA-05-5429-01 TCGA-35-3615-01
#> ARID1A 0.625 0.7692308 1 1
#> ATM 0.625 0.7692308 1 1
#> BRAF 0.625 0.7692308 1 1
#> CDKN2A 0.625 0.7692308 1 1
#> CMTR2 0.625 0.7692308 1 1
#> CTNNB1 0.625 0.7692308 1 1
#> EGFR 0.625 0.7692308 1 1
#> KEAP1 0.625 0.7692308 1 1
#> KRAS 0.625 0.7692308 1 1
#> MGA 0.625 0.7692308 1 1
#> NF1 0.625 0.7692308 1 1
#> PIK3CA 0.625 0.7692308 1 1
#> PTPRD 0.625 0.7692308 1 1
#> PTPRT 0.625 0.7692308 1 1
#> RB1 0.625 0.7692308 1 1
#> RBM10 0.625 0.7692308 1 1
#> SETBP1 0.625 0.7692308 1 1
#> SETD2 0.625 0.7692308 1 1
#> SMAD4 0.625 0.7692308 1 1
#> SMARCA4 0.625 0.7692308 1 1
#> STK11 0.625 0.7692308 1 1
#> TP53 0.625 0.7692308 1 1
#> U2AF1 0.625 0.7692308 1 1
#> TCGA-35-4122-01 TCGA-35-4123-01 TCGA-35-5375-01 TCGA-38-4625-01
#> ARID1A 0.7692308 0.7692308 0.7692308 0.625
#> ATM 0.7692308 0.7692308 0.7692308 0.625
#> BRAF 0.7692308 0.7692308 0.7692308 0.625
#> CDKN2A 0.7692308 0.7692308 0.7692308 0.625
#> CMTR2 0.7692308 0.7692308 0.7692308 0.625
#> CTNNB1 0.7692308 0.7692308 0.7692308 0.625
#> EGFR 0.7692308 0.7692308 0.7692308 0.625
#> KEAP1 0.7692308 0.7692308 0.7692308 0.625
#> KRAS 0.7692308 0.7692308 0.7692308 0.625
#> MGA 0.7692308 0.7692308 0.7692308 0.625
#> NF1 0.7692308 0.7692308 0.7692308 0.625
#> PIK3CA 0.7692308 0.7692308 0.7692308 0.625
#> PTPRD 0.7692308 0.7692308 0.7692308 0.625
#> PTPRT 0.7692308 0.7692308 0.7692308 0.625
#> RB1 0.7692308 0.7692308 0.7692308 0.625
#> RBM10 0.7692308 0.7692308 0.7692308 0.625
#> SETBP1 0.7692308 0.7692308 0.7692308 0.625
#> SETD2 0.7692308 0.7692308 0.7692308 0.625
#> SMAD4 0.7692308 0.7692308 0.7692308 0.625
#> SMARCA4 0.7692308 0.7692308 0.7692308 0.625
#> STK11 0.7692308 0.7692308 0.7692308 0.625
#> TP53 0.7692308 0.7692308 0.7692308 0.625
#> U2AF1 0.7692308 0.7692308 0.7692308 0.625
#> TCGA-38-4627-01 TCGA-38-4631-01 TCGA-38-4632-01 TCGA-38-6178-01
#> ARID1A 1 0.5263158 0.625 1
#> ATM 1 0.5263158 0.625 1
#> BRAF 1 0.5263158 0.625 1
#> CDKN2A 1 0.5263158 0.625 1
#> CMTR2 1 0.5263158 0.625 1
#> CTNNB1 1 0.5263158 0.625 1
#> EGFR 1 0.5263158 0.625 1
#> KEAP1 1 0.5263158 0.625 1
#> KRAS 1 0.5263158 0.625 1
#> MGA 1 0.5263158 0.625 1
#> NF1 1 0.5263158 0.625 1
#> PIK3CA 1 0.5263158 0.625 1
#> PTPRD 1 0.5263158 0.625 1
#> PTPRT 1 0.5263158 0.625 1
#> RB1 1 0.5263158 0.625 1
#> RBM10 1 0.5263158 0.625 1
#> SETBP1 1 0.5263158 0.625 1
#> SETD2 1 0.5263158 0.625 1
#> SMAD4 1 0.5263158 0.625 1
#> SMARCA4 1 0.5263158 0.625 1
#> STK11 1 0.5263158 0.625 1
#> TP53 1 0.5263158 0.625 1
#> U2AF1 1 0.5263158 0.625 1
#> TCGA-44-2656-01 TCGA-44-2657-01 TCGA-44-2662-01 TCGA-44-2665-01
#> ARID1A 0.5263158 0.7692308 1 1
#> ATM 0.5263158 0.7692308 1 1
#> BRAF 0.5263158 0.7692308 1 1
#> CDKN2A 0.5263158 0.7692308 1 1
#> CMTR2 0.5263158 0.7692308 1 1
#> CTNNB1 0.5263158 0.7692308 1 1
#> EGFR 0.5263158 0.7692308 1 1
#> KEAP1 0.5263158 0.7692308 1 1
#> KRAS 0.5263158 0.7692308 1 1
#> MGA 0.5263158 0.7692308 1 1
#> NF1 0.5263158 0.7692308 1 1
#> PIK3CA 0.5263158 0.7692308 1 1
#> PTPRD 0.5263158 0.7692308 1 1
#> PTPRT 0.5263158 0.7692308 1 1
#> RB1 0.5263158 0.7692308 1 1
#> RBM10 0.5263158 0.7692308 1 1
#> SETBP1 0.5263158 0.7692308 1 1
#> SETD2 0.5263158 0.7692308 1 1
#> SMAD4 0.5263158 0.7692308 1 1
#> SMARCA4 0.5263158 0.7692308 1 1
#> STK11 0.5263158 0.7692308 1 1
#> TP53 0.5263158 0.7692308 1 1
#> U2AF1 0.5263158 0.7692308 1 1
#> TCGA-44-2666-01 TCGA-44-2668-01 TCGA-44-3396-01 TCGA-44-5643-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-44-5645-01 TCGA-44-6145-01 TCGA-44-6146-01 TCGA-44-6774-01
#> ARID1A 1 0.7692308 1 0.7692308
#> ATM 1 0.7692308 1 0.7692308
#> BRAF 1 0.7692308 1 0.7692308
#> CDKN2A 1 0.7692308 1 0.7692308
#> CMTR2 1 0.7692308 1 0.7692308
#> CTNNB1 1 0.7692308 1 0.7692308
#> EGFR 1 0.7692308 1 0.7692308
#> KEAP1 1 0.7692308 1 0.7692308
#> KRAS 1 0.7692308 1 0.7692308
#> MGA 1 0.7692308 1 0.7692308
#> NF1 1 0.7692308 1 0.7692308
#> PIK3CA 1 0.7692308 1 0.7692308
#> PTPRD 1 0.7692308 1 0.7692308
#> PTPRT 1 0.7692308 1 0.7692308
#> RB1 1 0.7692308 1 0.7692308
#> RBM10 1 0.7692308 1 0.7692308
#> SETBP1 1 0.7692308 1 0.7692308
#> SETD2 1 0.7692308 1 0.7692308
#> SMAD4 1 0.7692308 1 0.7692308
#> SMARCA4 1 0.7692308 1 0.7692308
#> STK11 1 0.7692308 1 0.7692308
#> TP53 1 0.7692308 1 0.7692308
#> U2AF1 1 0.7692308 1 0.7692308
#> TCGA-44-6775-01 TCGA-44-6776-01 TCGA-44-6777-01 TCGA-44-7659-01
#> ARID1A 1 1 0.7692308 1
#> ATM 1 1 0.7692308 1
#> BRAF 1 1 0.7692308 1
#> CDKN2A 1 1 0.7692308 1
#> CMTR2 1 1 0.7692308 1
#> CTNNB1 1 1 0.7692308 1
#> EGFR 1 1 0.7692308 1
#> KEAP1 1 1 0.7692308 1
#> KRAS 1 1 0.7692308 1
#> MGA 1 1 0.7692308 1
#> NF1 1 1 0.7692308 1
#> PIK3CA 1 1 0.7692308 1
#> PTPRD 1 1 0.7692308 1
#> PTPRT 1 1 0.7692308 1
#> RB1 1 1 0.7692308 1
#> RBM10 1 1 0.7692308 1
#> SETBP1 1 1 0.7692308 1
#> SETD2 1 1 0.7692308 1
#> SMAD4 1 1 0.7692308 1
#> SMARCA4 1 1 0.7692308 1
#> STK11 1 1 0.7692308 1
#> TP53 1 1 0.7692308 1
#> U2AF1 1 1 0.7692308 1
#> TCGA-44-7661-01 TCGA-44-7662-01 TCGA-44-7670-01 TCGA-44-7671-01
#> ARID1A 0.7692308 0.625 0.4 0.7692308
#> ATM 0.7692308 0.625 0.4 0.7692308
#> BRAF 0.7692308 0.625 0.4 0.7692308
#> CDKN2A 0.7692308 0.625 0.4 0.7692308
#> CMTR2 0.7692308 0.625 0.4 0.7692308
#> CTNNB1 0.7692308 0.625 0.4 0.7692308
#> EGFR 0.7692308 0.625 0.4 0.7692308
#> KEAP1 0.7692308 0.625 0.4 0.7692308
#> KRAS 0.7692308 0.625 0.4 0.7692308
#> MGA 0.7692308 0.625 0.4 0.7692308
#> NF1 0.7692308 0.625 0.4 0.7692308
#> PIK3CA 0.7692308 0.625 0.4 0.7692308
#> PTPRD 0.7692308 0.625 0.4 0.7692308
#> PTPRT 0.7692308 0.625 0.4 0.7692308
#> RB1 0.7692308 0.625 0.4 0.7692308
#> RBM10 0.7692308 0.625 0.4 0.7692308
#> SETBP1 0.7692308 0.625 0.4 0.7692308
#> SETD2 0.7692308 0.625 0.4 0.7692308
#> SMAD4 0.7692308 0.625 0.4 0.7692308
#> SMARCA4 0.7692308 0.625 0.4 0.7692308
#> STK11 0.7692308 0.625 0.4 0.7692308
#> TP53 0.7692308 0.625 0.4 0.7692308
#> U2AF1 0.7692308 0.625 0.4 0.7692308
#> TCGA-44-7672-01 TCGA-44-8117-01 TCGA-44-8119-01 TCGA-44-8120-01
#> ARID1A 1 0.5263158 0.625 0.625
#> ATM 1 0.5263158 0.625 0.625
#> BRAF 1 0.5263158 0.625 0.625
#> CDKN2A 1 0.5263158 0.625 0.625
#> CMTR2 1 0.5263158 0.625 0.625
#> CTNNB1 1 0.5263158 0.625 0.625
#> EGFR 1 0.5263158 0.625 0.625
#> KEAP1 1 0.5263158 0.625 0.625
#> KRAS 1 0.5263158 0.625 0.625
#> MGA 1 0.5263158 0.625 0.625
#> NF1 1 0.5263158 0.625 0.625
#> PIK3CA 1 0.5263158 0.625 0.625
#> PTPRD 1 0.5263158 0.625 0.625
#> PTPRT 1 0.5263158 0.625 0.625
#> RB1 1 0.5263158 0.625 0.625
#> RBM10 1 0.5263158 0.625 0.625
#> SETBP1 1 0.5263158 0.625 0.625
#> SETD2 1 0.5263158 0.625 0.625
#> SMAD4 1 0.5263158 0.625 0.625
#> SMARCA4 1 0.5263158 0.625 0.625
#> STK11 1 0.5263158 0.625 0.625
#> TP53 1 0.5263158 0.625 0.625
#> U2AF1 1 0.5263158 0.625 0.625
#> TCGA-44-A47A-01 TCGA-44-A47G-01 TCGA-44-A4SS-01 TCGA-44-A4SU-01
#> ARID1A 0.7692308 1 0.625 1
#> ATM 0.7692308 1 0.625 1
#> BRAF 0.7692308 1 0.625 1
#> CDKN2A 0.7692308 1 0.625 1
#> CMTR2 0.7692308 1 0.625 1
#> CTNNB1 0.7692308 1 0.625 1
#> EGFR 0.7692308 1 0.625 1
#> KEAP1 0.7692308 1 0.625 1
#> KRAS 0.7692308 1 0.625 1
#> MGA 0.7692308 1 0.625 1
#> NF1 0.7692308 1 0.625 1
#> PIK3CA 0.7692308 1 0.625 1
#> PTPRD 0.7692308 1 0.625 1
#> PTPRT 0.7692308 1 0.625 1
#> RB1 0.7692308 1 0.625 1
#> RBM10 0.7692308 1 0.625 1
#> SETBP1 0.7692308 1 0.625 1
#> SETD2 0.7692308 1 0.625 1
#> SMAD4 0.7692308 1 0.625 1
#> SMARCA4 0.7692308 1 0.625 1
#> STK11 0.7692308 1 0.625 1
#> TP53 0.7692308 1 0.625 1
#> U2AF1 0.7692308 1 0.625 1
#> TCGA-49-4486-01 TCGA-49-4488-01 TCGA-49-4490-01 TCGA-49-4494-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-49-4505-01 TCGA-49-4506-01 TCGA-49-4507-01 TCGA-49-4510-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-49-4514-01 TCGA-49-6744-01 TCGA-49-6745-01 TCGA-49-AAQV-01
#> ARID1A 0.7692308 0.7692308 1 1
#> ATM 0.7692308 0.7692308 1 1
#> BRAF 0.7692308 0.7692308 1 1
#> CDKN2A 0.7692308 0.7692308 1 1
#> CMTR2 0.7692308 0.7692308 1 1
#> CTNNB1 0.7692308 0.7692308 1 1
#> EGFR 0.7692308 0.7692308 1 1
#> KEAP1 0.7692308 0.7692308 1 1
#> KRAS 0.7692308 0.7692308 1 1
#> MGA 0.7692308 0.7692308 1 1
#> NF1 0.7692308 0.7692308 1 1
#> PIK3CA 0.7692308 0.7692308 1 1
#> PTPRD 0.7692308 0.7692308 1 1
#> PTPRT 0.7692308 0.7692308 1 1
#> RB1 0.7692308 0.7692308 1 1
#> RBM10 0.7692308 0.7692308 1 1
#> SETBP1 0.7692308 0.7692308 1 1
#> SETD2 0.7692308 0.7692308 1 1
#> SMAD4 0.7692308 0.7692308 1 1
#> SMARCA4 0.7692308 0.7692308 1 1
#> STK11 0.7692308 0.7692308 1 1
#> TP53 0.7692308 0.7692308 1 1
#> U2AF1 0.7692308 0.7692308 1 1
#> TCGA-49-AAR9-01 TCGA-49-AARE-01 TCGA-49-AARN-01 TCGA-49-AARO-01
#> ARID1A 0.625 0.3571429 0.5263158 0.625
#> ATM 0.625 0.3571429 0.5263158 0.625
#> BRAF 0.625 0.3571429 0.5263158 0.625
#> CDKN2A 0.625 0.3571429 0.5263158 0.625
#> CMTR2 0.625 0.3571429 0.5263158 0.625
#> CTNNB1 0.625 0.3571429 0.5263158 0.625
#> EGFR 0.625 0.3571429 0.5263158 0.625
#> KEAP1 0.625 0.3571429 0.5263158 0.625
#> KRAS 0.625 0.3571429 0.5263158 0.625
#> MGA 0.625 0.3571429 0.5263158 0.625
#> NF1 0.625 0.3571429 0.5263158 0.625
#> PIK3CA 0.625 0.3571429 0.5263158 0.625
#> PTPRD 0.625 0.3571429 0.5263158 0.625
#> PTPRT 0.625 0.3571429 0.5263158 0.625
#> RB1 0.625 0.3571429 0.5263158 0.625
#> RBM10 0.625 0.3571429 0.5263158 0.625
#> SETBP1 0.625 0.3571429 0.5263158 0.625
#> SETD2 0.625 0.3571429 0.5263158 0.625
#> SMAD4 0.625 0.3571429 0.5263158 0.625
#> SMARCA4 0.625 0.3571429 0.5263158 0.625
#> STK11 0.625 0.3571429 0.5263158 0.625
#> TP53 0.625 0.3571429 0.5263158 0.625
#> U2AF1 0.625 0.3571429 0.5263158 0.625
#> TCGA-49-AARQ-01 TCGA-4B-A93V-01 TCGA-50-5044-01 TCGA-50-5051-01
#> ARID1A 0.5263158 1 1 1
#> ATM 0.5263158 1 1 1
#> BRAF 0.5263158 1 1 1
#> CDKN2A 0.5263158 1 1 1
#> CMTR2 0.5263158 1 1 1
#> CTNNB1 0.5263158 1 1 1
#> EGFR 0.5263158 1 1 1
#> KEAP1 0.5263158 1 1 1
#> KRAS 0.5263158 1 1 1
#> MGA 0.5263158 1 1 1
#> NF1 0.5263158 1 1 1
#> PIK3CA 0.5263158 1 1 1
#> PTPRD 0.5263158 1 1 1
#> PTPRT 0.5263158 1 1 1
#> RB1 0.5263158 1 1 1
#> RBM10 0.5263158 1 1 1
#> SETBP1 0.5263158 1 1 1
#> SETD2 0.5263158 1 1 1
#> SMAD4 0.5263158 1 1 1
#> SMARCA4 0.5263158 1 1 1
#> STK11 0.5263158 1 1 1
#> TP53 0.5263158 1 1 1
#> U2AF1 0.5263158 1 1 1
#> TCGA-50-5066-01 TCGA-50-5068-01 TCGA-50-5930-01 TCGA-50-5932-01
#> ARID1A 0.7692308 1 0.4 1
#> ATM 0.7692308 1 0.4 1
#> BRAF 0.7692308 1 0.4 1
#> CDKN2A 0.7692308 1 0.4 1
#> CMTR2 0.7692308 1 0.4 1
#> CTNNB1 0.7692308 1 0.4 1
#> EGFR 0.7692308 1 0.4 1
#> KEAP1 0.7692308 1 0.4 1
#> KRAS 0.7692308 1 0.4 1
#> MGA 0.7692308 1 0.4 1
#> NF1 0.7692308 1 0.4 1
#> PIK3CA 0.7692308 1 0.4 1
#> PTPRD 0.7692308 1 0.4 1
#> PTPRT 0.7692308 1 0.4 1
#> RB1 0.7692308 1 0.4 1
#> RBM10 0.7692308 1 0.4 1
#> SETBP1 0.7692308 1 0.4 1
#> SETD2 0.7692308 1 0.4 1
#> SMAD4 0.7692308 1 0.4 1
#> SMARCA4 0.7692308 1 0.4 1
#> STK11 0.7692308 1 0.4 1
#> TP53 0.7692308 1 0.4 1
#> U2AF1 0.7692308 1 0.4 1
#> TCGA-50-5933-01 TCGA-50-5936-01 TCGA-50-5939-01 TCGA-50-5941-01
#> ARID1A 0.625 1 1 0.7692308
#> ATM 0.625 1 1 0.7692308
#> BRAF 0.625 1 1 0.7692308
#> CDKN2A 0.625 1 1 0.7692308
#> CMTR2 0.625 1 1 0.7692308
#> CTNNB1 0.625 1 1 0.7692308
#> EGFR 0.625 1 1 0.7692308
#> KEAP1 0.625 1 1 0.7692308
#> KRAS 0.625 1 1 0.7692308
#> MGA 0.625 1 1 0.7692308
#> NF1 0.625 1 1 0.7692308
#> PIK3CA 0.625 1 1 0.7692308
#> PTPRD 0.625 1 1 0.7692308
#> PTPRT 0.625 1 1 0.7692308
#> RB1 0.625 1 1 0.7692308
#> RBM10 0.625 1 1 0.7692308
#> SETBP1 0.625 1 1 0.7692308
#> SETD2 0.625 1 1 0.7692308
#> SMAD4 0.625 1 1 0.7692308
#> SMARCA4 0.625 1 1 0.7692308
#> STK11 0.625 1 1 0.7692308
#> TP53 0.625 1 1 0.7692308
#> U2AF1 0.625 1 1 0.7692308
#> TCGA-50-5942-01 TCGA-50-5944-01 TCGA-50-5946-01 TCGA-50-6591-01
#> ARID1A 1 1 0.5263158 1
#> ATM 1 1 0.5263158 1
#> BRAF 1 1 0.5263158 1
#> CDKN2A 1 1 0.5263158 1
#> CMTR2 1 1 0.5263158 1
#> CTNNB1 1 1 0.5263158 1
#> EGFR 1 1 0.5263158 1
#> KEAP1 1 1 0.5263158 1
#> KRAS 1 1 0.5263158 1
#> MGA 1 1 0.5263158 1
#> NF1 1 1 0.5263158 1
#> PIK3CA 1 1 0.5263158 1
#> PTPRD 1 1 0.5263158 1
#> PTPRT 1 1 0.5263158 1
#> RB1 1 1 0.5263158 1
#> RBM10 1 1 0.5263158 1
#> SETBP1 1 1 0.5263158 1
#> SETD2 1 1 0.5263158 1
#> SMAD4 1 1 0.5263158 1
#> SMARCA4 1 1 0.5263158 1
#> STK11 1 1 0.5263158 1
#> TP53 1 1 0.5263158 1
#> U2AF1 1 1 0.5263158 1
#> TCGA-50-6592-01 TCGA-50-6593-01 TCGA-50-6594-01 TCGA-50-6595-01
#> ARID1A 0.7692308 0.7692308 0.625 1
#> ATM 0.7692308 0.7692308 0.625 1
#> BRAF 0.7692308 0.7692308 0.625 1
#> CDKN2A 0.7692308 0.7692308 0.625 1
#> CMTR2 0.7692308 0.7692308 0.625 1
#> CTNNB1 0.7692308 0.7692308 0.625 1
#> EGFR 0.7692308 0.7692308 0.625 1
#> KEAP1 0.7692308 0.7692308 0.625 1
#> KRAS 0.7692308 0.7692308 0.625 1
#> MGA 0.7692308 0.7692308 0.625 1
#> NF1 0.7692308 0.7692308 0.625 1
#> PIK3CA 0.7692308 0.7692308 0.625 1
#> PTPRD 0.7692308 0.7692308 0.625 1
#> PTPRT 0.7692308 0.7692308 0.625 1
#> RB1 0.7692308 0.7692308 0.625 1
#> RBM10 0.7692308 0.7692308 0.625 1
#> SETBP1 0.7692308 0.7692308 0.625 1
#> SETD2 0.7692308 0.7692308 0.625 1
#> SMAD4 0.7692308 0.7692308 0.625 1
#> SMARCA4 0.7692308 0.7692308 0.625 1
#> STK11 0.7692308 0.7692308 0.625 1
#> TP53 0.7692308 0.7692308 0.625 1
#> U2AF1 0.7692308 0.7692308 0.625 1
#> TCGA-50-6673-01 TCGA-50-7109-01 TCGA-50-8459-01 TCGA-50-8460-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-53-7626-01 TCGA-53-7813-01 TCGA-53-A4EZ-01 TCGA-55-1592-01
#> ARID1A 0.4 1 0.625 0.625
#> ATM 0.4 1 0.625 0.625
#> BRAF 0.4 1 0.625 0.625
#> CDKN2A 0.4 1 0.625 0.625
#> CMTR2 0.4 1 0.625 0.625
#> CTNNB1 0.4 1 0.625 0.625
#> EGFR 0.4 1 0.625 0.625
#> KEAP1 0.4 1 0.625 0.625
#> KRAS 0.4 1 0.625 0.625
#> MGA 0.4 1 0.625 0.625
#> NF1 0.4 1 0.625 0.625
#> PIK3CA 0.4 1 0.625 0.625
#> PTPRD 0.4 1 0.625 0.625
#> PTPRT 0.4 1 0.625 0.625
#> RB1 0.4 1 0.625 0.625
#> RBM10 0.4 1 0.625 0.625
#> SETBP1 0.4 1 0.625 0.625
#> SETD2 0.4 1 0.625 0.625
#> SMAD4 0.4 1 0.625 0.625
#> SMARCA4 0.4 1 0.625 0.625
#> STK11 0.4 1 0.625 0.625
#> TP53 0.4 1 0.625 0.625
#> U2AF1 0.4 1 0.625 0.625
#> TCGA-55-1595-01 TCGA-55-1596-01 TCGA-55-6642-01 TCGA-55-6968-01
#> ARID1A 0.7692308 1 1 0.625
#> ATM 0.7692308 1 1 0.625
#> BRAF 0.7692308 1 1 0.625
#> CDKN2A 0.7692308 1 1 0.625
#> CMTR2 0.7692308 1 1 0.625
#> CTNNB1 0.7692308 1 1 0.625
#> EGFR 0.7692308 1 1 0.625
#> KEAP1 0.7692308 1 1 0.625
#> KRAS 0.7692308 1 1 0.625
#> MGA 0.7692308 1 1 0.625
#> NF1 0.7692308 1 1 0.625
#> PIK3CA 0.7692308 1 1 0.625
#> PTPRD 0.7692308 1 1 0.625
#> PTPRT 0.7692308 1 1 0.625
#> RB1 0.7692308 1 1 0.625
#> RBM10 0.7692308 1 1 0.625
#> SETBP1 0.7692308 1 1 0.625
#> SETD2 0.7692308 1 1 0.625
#> SMAD4 0.7692308 1 1 0.625
#> SMARCA4 0.7692308 1 1 0.625
#> STK11 0.7692308 1 1 0.625
#> TP53 0.7692308 1 1 0.625
#> U2AF1 0.7692308 1 1 0.625
#> TCGA-55-6969-01 TCGA-55-6970-01 TCGA-55-6975-01 TCGA-55-6979-01
#> ARID1A 0.625 1 1 0.625
#> ATM 0.625 1 1 0.625
#> BRAF 0.625 1 1 0.625
#> CDKN2A 0.625 1 1 0.625
#> CMTR2 0.625 1 1 0.625
#> CTNNB1 0.625 1 1 0.625
#> EGFR 0.625 1 1 0.625
#> KEAP1 0.625 1 1 0.625
#> KRAS 0.625 1 1 0.625
#> MGA 0.625 1 1 0.625
#> NF1 0.625 1 1 0.625
#> PIK3CA 0.625 1 1 0.625
#> PTPRD 0.625 1 1 0.625
#> PTPRT 0.625 1 1 0.625
#> RB1 0.625 1 1 0.625
#> RBM10 0.625 1 1 0.625
#> SETBP1 0.625 1 1 0.625
#> SETD2 0.625 1 1 0.625
#> SMAD4 0.625 1 1 0.625
#> SMARCA4 0.625 1 1 0.625
#> STK11 0.625 1 1 0.625
#> TP53 0.625 1 1 0.625
#> U2AF1 0.625 1 1 0.625
#> TCGA-55-6981-01 TCGA-55-6983-01 TCGA-55-6984-01 TCGA-55-7281-01
#> ARID1A 0.7692308 1 1 0.625
#> ATM 0.7692308 1 1 0.625
#> BRAF 0.7692308 1 1 0.625
#> CDKN2A 0.7692308 1 1 0.625
#> CMTR2 0.7692308 1 1 0.625
#> CTNNB1 0.7692308 1 1 0.625
#> EGFR 0.7692308 1 1 0.625
#> KEAP1 0.7692308 1 1 0.625
#> KRAS 0.7692308 1 1 0.625
#> MGA 0.7692308 1 1 0.625
#> NF1 0.7692308 1 1 0.625
#> PIK3CA 0.7692308 1 1 0.625
#> PTPRD 0.7692308 1 1 0.625
#> PTPRT 0.7692308 1 1 0.625
#> RB1 0.7692308 1 1 0.625
#> RBM10 0.7692308 1 1 0.625
#> SETBP1 0.7692308 1 1 0.625
#> SETD2 0.7692308 1 1 0.625
#> SMAD4 0.7692308 1 1 0.625
#> SMARCA4 0.7692308 1 1 0.625
#> STK11 0.7692308 1 1 0.625
#> TP53 0.7692308 1 1 0.625
#> U2AF1 0.7692308 1 1 0.625
#> TCGA-55-7283-01 TCGA-55-7284-01 TCGA-55-7570-01 TCGA-55-7573-01
#> ARID1A 0.7692308 1 0.7692308 1
#> ATM 0.7692308 1 0.7692308 1
#> BRAF 0.7692308 1 0.7692308 1
#> CDKN2A 0.7692308 1 0.7692308 1
#> CMTR2 0.7692308 1 0.7692308 1
#> CTNNB1 0.7692308 1 0.7692308 1
#> EGFR 0.7692308 1 0.7692308 1
#> KEAP1 0.7692308 1 0.7692308 1
#> KRAS 0.7692308 1 0.7692308 1
#> MGA 0.7692308 1 0.7692308 1
#> NF1 0.7692308 1 0.7692308 1
#> PIK3CA 0.7692308 1 0.7692308 1
#> PTPRD 0.7692308 1 0.7692308 1
#> PTPRT 0.7692308 1 0.7692308 1
#> RB1 0.7692308 1 0.7692308 1
#> RBM10 0.7692308 1 0.7692308 1
#> SETBP1 0.7692308 1 0.7692308 1
#> SETD2 0.7692308 1 0.7692308 1
#> SMAD4 0.7692308 1 0.7692308 1
#> SMARCA4 0.7692308 1 0.7692308 1
#> STK11 0.7692308 1 0.7692308 1
#> TP53 0.7692308 1 0.7692308 1
#> U2AF1 0.7692308 1 0.7692308 1
#> TCGA-55-7576-01 TCGA-55-7724-01 TCGA-55-7725-01 TCGA-55-7726-01
#> ARID1A 0.7692308 0.7692308 1 1
#> ATM 0.7692308 0.7692308 1 1
#> BRAF 0.7692308 0.7692308 1 1
#> CDKN2A 0.7692308 0.7692308 1 1
#> CMTR2 0.7692308 0.7692308 1 1
#> CTNNB1 0.7692308 0.7692308 1 1
#> EGFR 0.7692308 0.7692308 1 1
#> KEAP1 0.7692308 0.7692308 1 1
#> KRAS 0.7692308 0.7692308 1 1
#> MGA 0.7692308 0.7692308 1 1
#> NF1 0.7692308 0.7692308 1 1
#> PIK3CA 0.7692308 0.7692308 1 1
#> PTPRD 0.7692308 0.7692308 1 1
#> PTPRT 0.7692308 0.7692308 1 1
#> RB1 0.7692308 0.7692308 1 1
#> RBM10 0.7692308 0.7692308 1 1
#> SETBP1 0.7692308 0.7692308 1 1
#> SETD2 0.7692308 0.7692308 1 1
#> SMAD4 0.7692308 0.7692308 1 1
#> SMARCA4 0.7692308 0.7692308 1 1
#> STK11 0.7692308 0.7692308 1 1
#> TP53 0.7692308 0.7692308 1 1
#> U2AF1 0.7692308 0.7692308 1 1
#> TCGA-55-7727-01 TCGA-55-7728-01 TCGA-55-7815-01 TCGA-55-7903-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-55-7907-01 TCGA-55-7910-01 TCGA-55-7911-01 TCGA-55-7913-01
#> ARID1A 0.4 0.7692308 0.7692308 0.7692308
#> ATM 0.4 0.7692308 0.7692308 0.7692308
#> BRAF 0.4 0.7692308 0.7692308 0.7692308
#> CDKN2A 0.4 0.7692308 0.7692308 0.7692308
#> CMTR2 0.4 0.7692308 0.7692308 0.7692308
#> CTNNB1 0.4 0.7692308 0.7692308 0.7692308
#> EGFR 0.4 0.7692308 0.7692308 0.7692308
#> KEAP1 0.4 0.7692308 0.7692308 0.7692308
#> KRAS 0.4 0.7692308 0.7692308 0.7692308
#> MGA 0.4 0.7692308 0.7692308 0.7692308
#> NF1 0.4 0.7692308 0.7692308 0.7692308
#> PIK3CA 0.4 0.7692308 0.7692308 0.7692308
#> PTPRD 0.4 0.7692308 0.7692308 0.7692308
#> PTPRT 0.4 0.7692308 0.7692308 0.7692308
#> RB1 0.4 0.7692308 0.7692308 0.7692308
#> RBM10 0.4 0.7692308 0.7692308 0.7692308
#> SETBP1 0.4 0.7692308 0.7692308 0.7692308
#> SETD2 0.4 0.7692308 0.7692308 0.7692308
#> SMAD4 0.4 0.7692308 0.7692308 0.7692308
#> SMARCA4 0.4 0.7692308 0.7692308 0.7692308
#> STK11 0.4 0.7692308 0.7692308 0.7692308
#> TP53 0.4 0.7692308 0.7692308 0.7692308
#> U2AF1 0.4 0.7692308 0.7692308 0.7692308
#> TCGA-55-7914-01 TCGA-55-7994-01 TCGA-55-7995-01 TCGA-55-8085-01
#> ARID1A 1 0.3225806 0.5263158 0.7692308
#> ATM 1 0.3225806 0.5263158 0.7692308
#> BRAF 1 0.3225806 0.5263158 0.7692308
#> CDKN2A 1 0.3225806 0.5263158 0.7692308
#> CMTR2 1 0.3225806 0.5263158 0.7692308
#> CTNNB1 1 0.3225806 0.5263158 0.7692308
#> EGFR 1 0.3225806 0.5263158 0.7692308
#> KEAP1 1 0.3225806 0.5263158 0.7692308
#> KRAS 1 0.3225806 0.5263158 0.7692308
#> MGA 1 0.3225806 0.5263158 0.7692308
#> NF1 1 0.3225806 0.5263158 0.7692308
#> PIK3CA 1 0.3225806 0.5263158 0.7692308
#> PTPRD 1 0.3225806 0.5263158 0.7692308
#> PTPRT 1 0.3225806 0.5263158 0.7692308
#> RB1 1 0.3225806 0.5263158 0.7692308
#> RBM10 1 0.3225806 0.5263158 0.7692308
#> SETBP1 1 0.3225806 0.5263158 0.7692308
#> SETD2 1 0.3225806 0.5263158 0.7692308
#> SMAD4 1 0.3225806 0.5263158 0.7692308
#> SMARCA4 1 0.3225806 0.5263158 0.7692308
#> STK11 1 0.3225806 0.5263158 0.7692308
#> TP53 1 0.3225806 0.5263158 0.7692308
#> U2AF1 1 0.3225806 0.5263158 0.7692308
#> TCGA-55-8089-01 TCGA-55-8090-01 TCGA-55-8092-01 TCGA-55-8094-01
#> ARID1A 0.4 1 0.625 0.625
#> ATM 0.4 1 0.625 0.625
#> BRAF 0.4 1 0.625 0.625
#> CDKN2A 0.4 1 0.625 0.625
#> CMTR2 0.4 1 0.625 0.625
#> CTNNB1 0.4 1 0.625 0.625
#> EGFR 0.4 1 0.625 0.625
#> KEAP1 0.4 1 0.625 0.625
#> KRAS 0.4 1 0.625 0.625
#> MGA 0.4 1 0.625 0.625
#> NF1 0.4 1 0.625 0.625
#> PIK3CA 0.4 1 0.625 0.625
#> PTPRD 0.4 1 0.625 0.625
#> PTPRT 0.4 1 0.625 0.625
#> RB1 0.4 1 0.625 0.625
#> RBM10 0.4 1 0.625 0.625
#> SETBP1 0.4 1 0.625 0.625
#> SETD2 0.4 1 0.625 0.625
#> SMAD4 0.4 1 0.625 0.625
#> SMARCA4 0.4 1 0.625 0.625
#> STK11 0.4 1 0.625 0.625
#> TP53 0.4 1 0.625 0.625
#> U2AF1 0.4 1 0.625 0.625
#> TCGA-55-8096-01 TCGA-55-8097-01 TCGA-55-8203-01 TCGA-55-8205-01
#> ARID1A 1 1 0.7692308 0.625
#> ATM 1 1 0.7692308 0.625
#> BRAF 1 1 0.7692308 0.625
#> CDKN2A 1 1 0.7692308 0.625
#> CMTR2 1 1 0.7692308 0.625
#> CTNNB1 1 1 0.7692308 0.625
#> EGFR 1 1 0.7692308 0.625
#> KEAP1 1 1 0.7692308 0.625
#> KRAS 1 1 0.7692308 0.625
#> MGA 1 1 0.7692308 0.625
#> NF1 1 1 0.7692308 0.625
#> PIK3CA 1 1 0.7692308 0.625
#> PTPRD 1 1 0.7692308 0.625
#> PTPRT 1 1 0.7692308 0.625
#> RB1 1 1 0.7692308 0.625
#> RBM10 1 1 0.7692308 0.625
#> SETBP1 1 1 0.7692308 0.625
#> SETD2 1 1 0.7692308 0.625
#> SMAD4 1 1 0.7692308 0.625
#> SMARCA4 1 1 0.7692308 0.625
#> STK11 1 1 0.7692308 0.625
#> TP53 1 1 0.7692308 0.625
#> U2AF1 1 1 0.7692308 0.625
#> TCGA-55-8207-01 TCGA-55-8208-01 TCGA-55-8299-01 TCGA-55-8301-01
#> ARID1A 0.7692308 0.7692308 0.7692308 0.7692308
#> ATM 0.7692308 0.7692308 0.7692308 0.7692308
#> BRAF 0.7692308 0.7692308 0.7692308 0.7692308
#> CDKN2A 0.7692308 0.7692308 0.7692308 0.7692308
#> CMTR2 0.7692308 0.7692308 0.7692308 0.7692308
#> CTNNB1 0.7692308 0.7692308 0.7692308 0.7692308
#> EGFR 0.7692308 0.7692308 0.7692308 0.7692308
#> KEAP1 0.7692308 0.7692308 0.7692308 0.7692308
#> KRAS 0.7692308 0.7692308 0.7692308 0.7692308
#> MGA 0.7692308 0.7692308 0.7692308 0.7692308
#> NF1 0.7692308 0.7692308 0.7692308 0.7692308
#> PIK3CA 0.7692308 0.7692308 0.7692308 0.7692308
#> PTPRD 0.7692308 0.7692308 0.7692308 0.7692308
#> PTPRT 0.7692308 0.7692308 0.7692308 0.7692308
#> RB1 0.7692308 0.7692308 0.7692308 0.7692308
#> RBM10 0.7692308 0.7692308 0.7692308 0.7692308
#> SETBP1 0.7692308 0.7692308 0.7692308 0.7692308
#> SETD2 0.7692308 0.7692308 0.7692308 0.7692308
#> SMAD4 0.7692308 0.7692308 0.7692308 0.7692308
#> SMARCA4 0.7692308 0.7692308 0.7692308 0.7692308
#> STK11 0.7692308 0.7692308 0.7692308 0.7692308
#> TP53 0.7692308 0.7692308 0.7692308 0.7692308
#> U2AF1 0.7692308 0.7692308 0.7692308 0.7692308
#> TCGA-55-8302-01 TCGA-55-8505-01 TCGA-55-8506-01 TCGA-55-8508-01
#> ARID1A 0.5263158 1 0.2941176 1
#> ATM 0.5263158 1 0.2941176 1
#> BRAF 0.5263158 1 0.2941176 1
#> CDKN2A 0.5263158 1 0.2941176 1
#> CMTR2 0.5263158 1 0.2941176 1
#> CTNNB1 0.5263158 1 0.2941176 1
#> EGFR 0.5263158 1 0.2941176 1
#> KEAP1 0.5263158 1 0.2941176 1
#> KRAS 0.5263158 1 0.2941176 1
#> MGA 0.5263158 1 0.2941176 1
#> NF1 0.5263158 1 0.2941176 1
#> PIK3CA 0.5263158 1 0.2941176 1
#> PTPRD 0.5263158 1 0.2941176 1
#> PTPRT 0.5263158 1 0.2941176 1
#> RB1 0.5263158 1 0.2941176 1
#> RBM10 0.5263158 1 0.2941176 1
#> SETBP1 0.5263158 1 0.2941176 1
#> SETD2 0.5263158 1 0.2941176 1
#> SMAD4 0.5263158 1 0.2941176 1
#> SMARCA4 0.5263158 1 0.2941176 1
#> STK11 0.5263158 1 0.2941176 1
#> TP53 0.5263158 1 0.2941176 1
#> U2AF1 0.5263158 1 0.2941176 1
#> TCGA-55-8511-01 TCGA-55-8512-01 TCGA-55-8514-01 TCGA-55-8614-01
#> ARID1A 0.625 1 0.7692308 0.7692308
#> ATM 0.625 1 0.7692308 0.7692308
#> BRAF 0.625 1 0.7692308 0.7692308
#> CDKN2A 0.625 1 0.7692308 0.7692308
#> CMTR2 0.625 1 0.7692308 0.7692308
#> CTNNB1 0.625 1 0.7692308 0.7692308
#> EGFR 0.625 1 0.7692308 0.7692308
#> KEAP1 0.625 1 0.7692308 0.7692308
#> KRAS 0.625 1 0.7692308 0.7692308
#> MGA 0.625 1 0.7692308 0.7692308
#> NF1 0.625 1 0.7692308 0.7692308
#> PIK3CA 0.625 1 0.7692308 0.7692308
#> PTPRD 0.625 1 0.7692308 0.7692308
#> PTPRT 0.625 1 0.7692308 0.7692308
#> RB1 0.625 1 0.7692308 0.7692308
#> RBM10 0.625 1 0.7692308 0.7692308
#> SETBP1 0.625 1 0.7692308 0.7692308
#> SETD2 0.625 1 0.7692308 0.7692308
#> SMAD4 0.625 1 0.7692308 0.7692308
#> SMARCA4 0.625 1 0.7692308 0.7692308
#> STK11 0.625 1 0.7692308 0.7692308
#> TP53 0.625 1 0.7692308 0.7692308
#> U2AF1 0.625 1 0.7692308 0.7692308
#> TCGA-55-8615-01 TCGA-55-8616-01 TCGA-55-8620-01 TCGA-55-A48X-01
#> ARID1A 1 0.625 0.625 0.7692308
#> ATM 1 0.625 0.625 0.7692308
#> BRAF 1 0.625 0.625 0.7692308
#> CDKN2A 1 0.625 0.625 0.7692308
#> CMTR2 1 0.625 0.625 0.7692308
#> CTNNB1 1 0.625 0.625 0.7692308
#> EGFR 1 0.625 0.625 0.7692308
#> KEAP1 1 0.625 0.625 0.7692308
#> KRAS 1 0.625 0.625 0.7692308
#> MGA 1 0.625 0.625 0.7692308
#> NF1 1 0.625 0.625 0.7692308
#> PIK3CA 1 0.625 0.625 0.7692308
#> PTPRD 1 0.625 0.625 0.7692308
#> PTPRT 1 0.625 0.625 0.7692308
#> RB1 1 0.625 0.625 0.7692308
#> RBM10 1 0.625 0.625 0.7692308
#> SETBP1 1 0.625 0.625 0.7692308
#> SETD2 1 0.625 0.625 0.7692308
#> SMAD4 1 0.625 0.625 0.7692308
#> SMARCA4 1 0.625 0.625 0.7692308
#> STK11 1 0.625 0.625 0.7692308
#> TP53 1 0.625 0.625 0.7692308
#> U2AF1 1 0.625 0.625 0.7692308
#> TCGA-55-A48Y-01 TCGA-55-A48Z-01 TCGA-55-A490-01 TCGA-55-A491-01
#> ARID1A 0.7692308 1 0.3571429 0.7692308
#> ATM 0.7692308 1 0.3571429 0.7692308
#> BRAF 0.7692308 1 0.3571429 0.7692308
#> CDKN2A 0.7692308 1 0.3571429 0.7692308
#> CMTR2 0.7692308 1 0.3571429 0.7692308
#> CTNNB1 0.7692308 1 0.3571429 0.7692308
#> EGFR 0.7692308 1 0.3571429 0.7692308
#> KEAP1 0.7692308 1 0.3571429 0.7692308
#> KRAS 0.7692308 1 0.3571429 0.7692308
#> MGA 0.7692308 1 0.3571429 0.7692308
#> NF1 0.7692308 1 0.3571429 0.7692308
#> PIK3CA 0.7692308 1 0.3571429 0.7692308
#> PTPRD 0.7692308 1 0.3571429 0.7692308
#> PTPRT 0.7692308 1 0.3571429 0.7692308
#> RB1 0.7692308 1 0.3571429 0.7692308
#> RBM10 0.7692308 1 0.3571429 0.7692308
#> SETBP1 0.7692308 1 0.3571429 0.7692308
#> SETD2 0.7692308 1 0.3571429 0.7692308
#> SMAD4 0.7692308 1 0.3571429 0.7692308
#> SMARCA4 0.7692308 1 0.3571429 0.7692308
#> STK11 0.7692308 1 0.3571429 0.7692308
#> TP53 0.7692308 1 0.3571429 0.7692308
#> U2AF1 0.7692308 1 0.3571429 0.7692308
#> TCGA-55-A492-01 TCGA-55-A493-01 TCGA-55-A494-01 TCGA-55-A4DG-01
#> ARID1A 0.7692308 0.7692308 0.7692308 0.5263158
#> ATM 0.7692308 0.7692308 0.7692308 0.5263158
#> BRAF 0.7692308 0.7692308 0.7692308 0.5263158
#> CDKN2A 0.7692308 0.7692308 0.7692308 0.5263158
#> CMTR2 0.7692308 0.7692308 0.7692308 0.5263158
#> CTNNB1 0.7692308 0.7692308 0.7692308 0.5263158
#> EGFR 0.7692308 0.7692308 0.7692308 0.5263158
#> KEAP1 0.7692308 0.7692308 0.7692308 0.5263158
#> KRAS 0.7692308 0.7692308 0.7692308 0.5263158
#> MGA 0.7692308 0.7692308 0.7692308 0.5263158
#> NF1 0.7692308 0.7692308 0.7692308 0.5263158
#> PIK3CA 0.7692308 0.7692308 0.7692308 0.5263158
#> PTPRD 0.7692308 0.7692308 0.7692308 0.5263158
#> PTPRT 0.7692308 0.7692308 0.7692308 0.5263158
#> RB1 0.7692308 0.7692308 0.7692308 0.5263158
#> RBM10 0.7692308 0.7692308 0.7692308 0.5263158
#> SETBP1 0.7692308 0.7692308 0.7692308 0.5263158
#> SETD2 0.7692308 0.7692308 0.7692308 0.5263158
#> SMAD4 0.7692308 0.7692308 0.7692308 0.5263158
#> SMARCA4 0.7692308 0.7692308 0.7692308 0.5263158
#> STK11 0.7692308 0.7692308 0.7692308 0.5263158
#> TP53 0.7692308 0.7692308 0.7692308 0.5263158
#> U2AF1 0.7692308 0.7692308 0.7692308 0.5263158
#> TCGA-55-A57B-01 TCGA-62-8394-01 TCGA-62-8395-01 TCGA-62-8398-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-62-8399-01 TCGA-62-8402-01 TCGA-62-A46R-01 TCGA-62-A46S-01
#> ARID1A 0.625 1 1 1
#> ATM 0.625 1 1 1
#> BRAF 0.625 1 1 1
#> CDKN2A 0.625 1 1 1
#> CMTR2 0.625 1 1 1
#> CTNNB1 0.625 1 1 1
#> EGFR 0.625 1 1 1
#> KEAP1 0.625 1 1 1
#> KRAS 0.625 1 1 1
#> MGA 0.625 1 1 1
#> NF1 0.625 1 1 1
#> PIK3CA 0.625 1 1 1
#> PTPRD 0.625 1 1 1
#> PTPRT 0.625 1 1 1
#> RB1 0.625 1 1 1
#> RBM10 0.625 1 1 1
#> SETBP1 0.625 1 1 1
#> SETD2 0.625 1 1 1
#> SMAD4 0.625 1 1 1
#> SMARCA4 0.625 1 1 1
#> STK11 0.625 1 1 1
#> TP53 0.625 1 1 1
#> U2AF1 0.625 1 1 1
#> TCGA-62-A46U-01 TCGA-62-A46V-01 TCGA-62-A470-01 TCGA-62-A471-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-62-A472-01 TCGA-64-1676-01 TCGA-64-1677-01 TCGA-64-1679-01
#> ARID1A 1 0.625 1 0.625
#> ATM 1 0.625 1 0.625
#> BRAF 1 0.625 1 0.625
#> CDKN2A 1 0.625 1 0.625
#> CMTR2 1 0.625 1 0.625
#> CTNNB1 1 0.625 1 0.625
#> EGFR 1 0.625 1 0.625
#> KEAP1 1 0.625 1 0.625
#> KRAS 1 0.625 1 0.625
#> MGA 1 0.625 1 0.625
#> NF1 1 0.625 1 0.625
#> PIK3CA 1 0.625 1 0.625
#> PTPRD 1 0.625 1 0.625
#> PTPRT 1 0.625 1 0.625
#> RB1 1 0.625 1 0.625
#> RBM10 1 0.625 1 0.625
#> SETBP1 1 0.625 1 0.625
#> SETD2 1 0.625 1 0.625
#> SMAD4 1 0.625 1 0.625
#> SMARCA4 1 0.625 1 0.625
#> STK11 1 0.625 1 0.625
#> TP53 1 0.625 1 0.625
#> U2AF1 1 0.625 1 0.625
#> TCGA-64-1680-01 TCGA-64-1681-01 TCGA-64-5774-01 TCGA-64-5775-01
#> ARID1A 1 1 1 0.625
#> ATM 1 1 1 0.625
#> BRAF 1 1 1 0.625
#> CDKN2A 1 1 1 0.625
#> CMTR2 1 1 1 0.625
#> CTNNB1 1 1 1 0.625
#> EGFR 1 1 1 0.625
#> KEAP1 1 1 1 0.625
#> KRAS 1 1 1 0.625
#> MGA 1 1 1 0.625
#> NF1 1 1 1 0.625
#> PIK3CA 1 1 1 0.625
#> PTPRD 1 1 1 0.625
#> PTPRT 1 1 1 0.625
#> RB1 1 1 1 0.625
#> RBM10 1 1 1 0.625
#> SETBP1 1 1 1 0.625
#> SETD2 1 1 1 0.625
#> SMAD4 1 1 1 0.625
#> SMARCA4 1 1 1 0.625
#> STK11 1 1 1 0.625
#> TP53 1 1 1 0.625
#> U2AF1 1 1 1 0.625
#> TCGA-64-5778-01 TCGA-64-5815-01 TCGA-67-3771-01 TCGA-67-3772-01
#> ARID1A 0.625 1 0.4545455 1
#> ATM 0.625 1 0.4545455 1
#> BRAF 0.625 1 0.4545455 1
#> CDKN2A 0.625 1 0.4545455 1
#> CMTR2 0.625 1 0.4545455 1
#> CTNNB1 0.625 1 0.4545455 1
#> EGFR 0.625 1 0.4545455 1
#> KEAP1 0.625 1 0.4545455 1
#> KRAS 0.625 1 0.4545455 1
#> MGA 0.625 1 0.4545455 1
#> NF1 0.625 1 0.4545455 1
#> PIK3CA 0.625 1 0.4545455 1
#> PTPRD 0.625 1 0.4545455 1
#> PTPRT 0.625 1 0.4545455 1
#> RB1 0.625 1 0.4545455 1
#> RBM10 0.625 1 0.4545455 1
#> SETBP1 0.625 1 0.4545455 1
#> SETD2 0.625 1 0.4545455 1
#> SMAD4 0.625 1 0.4545455 1
#> SMARCA4 0.625 1 0.4545455 1
#> STK11 0.625 1 0.4545455 1
#> TP53 0.625 1 0.4545455 1
#> U2AF1 0.625 1 0.4545455 1
#> TCGA-67-3773-01 TCGA-67-3774-01 TCGA-67-4679-01 TCGA-67-6215-01
#> ARID1A 1 1 0.7692308 1
#> ATM 1 1 0.7692308 1
#> BRAF 1 1 0.7692308 1
#> CDKN2A 1 1 0.7692308 1
#> CMTR2 1 1 0.7692308 1
#> CTNNB1 1 1 0.7692308 1
#> EGFR 1 1 0.7692308 1
#> KEAP1 1 1 0.7692308 1
#> KRAS 1 1 0.7692308 1
#> MGA 1 1 0.7692308 1
#> NF1 1 1 0.7692308 1
#> PIK3CA 1 1 0.7692308 1
#> PTPRD 1 1 0.7692308 1
#> PTPRT 1 1 0.7692308 1
#> RB1 1 1 0.7692308 1
#> RBM10 1 1 0.7692308 1
#> SETBP1 1 1 0.7692308 1
#> SETD2 1 1 0.7692308 1
#> SMAD4 1 1 0.7692308 1
#> SMARCA4 1 1 0.7692308 1
#> STK11 1 1 0.7692308 1
#> TP53 1 1 0.7692308 1
#> U2AF1 1 1 0.7692308 1
#> TCGA-67-6216-01 TCGA-67-6217-01 TCGA-69-7765-01 TCGA-69-7973-01
#> ARID1A 1 1 0.625 0.7692308
#> ATM 1 1 0.625 0.7692308
#> BRAF 1 1 0.625 0.7692308
#> CDKN2A 1 1 0.625 0.7692308
#> CMTR2 1 1 0.625 0.7692308
#> CTNNB1 1 1 0.625 0.7692308
#> EGFR 1 1 0.625 0.7692308
#> KEAP1 1 1 0.625 0.7692308
#> KRAS 1 1 0.625 0.7692308
#> MGA 1 1 0.625 0.7692308
#> NF1 1 1 0.625 0.7692308
#> PIK3CA 1 1 0.625 0.7692308
#> PTPRD 1 1 0.625 0.7692308
#> PTPRT 1 1 0.625 0.7692308
#> RB1 1 1 0.625 0.7692308
#> RBM10 1 1 0.625 0.7692308
#> SETBP1 1 1 0.625 0.7692308
#> SETD2 1 1 0.625 0.7692308
#> SMAD4 1 1 0.625 0.7692308
#> SMARCA4 1 1 0.625 0.7692308
#> STK11 1 1 0.625 0.7692308
#> TP53 1 1 0.625 0.7692308
#> U2AF1 1 1 0.625 0.7692308
#> TCGA-69-7974-01 TCGA-69-7978-01 TCGA-69-7980-01 TCGA-69-8253-01
#> ARID1A 0.625 0.625 0.5263158 1
#> ATM 0.625 0.625 0.5263158 1
#> BRAF 0.625 0.625 0.5263158 1
#> CDKN2A 0.625 0.625 0.5263158 1
#> CMTR2 0.625 0.625 0.5263158 1
#> CTNNB1 0.625 0.625 0.5263158 1
#> EGFR 0.625 0.625 0.5263158 1
#> KEAP1 0.625 0.625 0.5263158 1
#> KRAS 0.625 0.625 0.5263158 1
#> MGA 0.625 0.625 0.5263158 1
#> NF1 0.625 0.625 0.5263158 1
#> PIK3CA 0.625 0.625 0.5263158 1
#> PTPRD 0.625 0.625 0.5263158 1
#> PTPRT 0.625 0.625 0.5263158 1
#> RB1 0.625 0.625 0.5263158 1
#> RBM10 0.625 0.625 0.5263158 1
#> SETBP1 0.625 0.625 0.5263158 1
#> SETD2 0.625 0.625 0.5263158 1
#> SMAD4 0.625 0.625 0.5263158 1
#> SMARCA4 0.625 0.625 0.5263158 1
#> STK11 0.625 0.625 0.5263158 1
#> TP53 0.625 0.625 0.5263158 1
#> U2AF1 0.625 0.625 0.5263158 1
#> TCGA-69-8254-01 TCGA-73-4658-01 TCGA-73-4662-01 TCGA-73-4666-01
#> ARID1A 1 0.7692308 0.7692308 0.7692308
#> ATM 1 0.7692308 0.7692308 0.7692308
#> BRAF 1 0.7692308 0.7692308 0.7692308
#> CDKN2A 1 0.7692308 0.7692308 0.7692308
#> CMTR2 1 0.7692308 0.7692308 0.7692308
#> CTNNB1 1 0.7692308 0.7692308 0.7692308
#> EGFR 1 0.7692308 0.7692308 0.7692308
#> KEAP1 1 0.7692308 0.7692308 0.7692308
#> KRAS 1 0.7692308 0.7692308 0.7692308
#> MGA 1 0.7692308 0.7692308 0.7692308
#> NF1 1 0.7692308 0.7692308 0.7692308
#> PIK3CA 1 0.7692308 0.7692308 0.7692308
#> PTPRD 1 0.7692308 0.7692308 0.7692308
#> PTPRT 1 0.7692308 0.7692308 0.7692308
#> RB1 1 0.7692308 0.7692308 0.7692308
#> RBM10 1 0.7692308 0.7692308 0.7692308
#> SETBP1 1 0.7692308 0.7692308 0.7692308
#> SETD2 1 0.7692308 0.7692308 0.7692308
#> SMAD4 1 0.7692308 0.7692308 0.7692308
#> SMARCA4 1 0.7692308 0.7692308 0.7692308
#> STK11 1 0.7692308 0.7692308 0.7692308
#> TP53 1 0.7692308 0.7692308 0.7692308
#> U2AF1 1 0.7692308 0.7692308 0.7692308
#> TCGA-73-4670-01 TCGA-73-4676-01 TCGA-73-4677-01 TCGA-73-7498-01
#> ARID1A 0.7692308 1 0.7692308 1
#> ATM 0.7692308 1 0.7692308 1
#> BRAF 0.7692308 1 0.7692308 1
#> CDKN2A 0.7692308 1 0.7692308 1
#> CMTR2 0.7692308 1 0.7692308 1
#> CTNNB1 0.7692308 1 0.7692308 1
#> EGFR 0.7692308 1 0.7692308 1
#> KEAP1 0.7692308 1 0.7692308 1
#> KRAS 0.7692308 1 0.7692308 1
#> MGA 0.7692308 1 0.7692308 1
#> NF1 0.7692308 1 0.7692308 1
#> PIK3CA 0.7692308 1 0.7692308 1
#> PTPRD 0.7692308 1 0.7692308 1
#> PTPRT 0.7692308 1 0.7692308 1
#> RB1 0.7692308 1 0.7692308 1
#> RBM10 0.7692308 1 0.7692308 1
#> SETBP1 0.7692308 1 0.7692308 1
#> SETD2 0.7692308 1 0.7692308 1
#> SMAD4 0.7692308 1 0.7692308 1
#> SMARCA4 0.7692308 1 0.7692308 1
#> STK11 0.7692308 1 0.7692308 1
#> TP53 0.7692308 1 0.7692308 1
#> U2AF1 0.7692308 1 0.7692308 1
#> TCGA-73-7499-01 TCGA-73-A9RS-01 TCGA-75-5126-01 TCGA-75-5146-01
#> ARID1A 1 0.4545455 0.5263158 1
#> ATM 1 0.4545455 0.5263158 1
#> BRAF 1 0.4545455 0.5263158 1
#> CDKN2A 1 0.4545455 0.5263158 1
#> CMTR2 1 0.4545455 0.5263158 1
#> CTNNB1 1 0.4545455 0.5263158 1
#> EGFR 1 0.4545455 0.5263158 1
#> KEAP1 1 0.4545455 0.5263158 1
#> KRAS 1 0.4545455 0.5263158 1
#> MGA 1 0.4545455 0.5263158 1
#> NF1 1 0.4545455 0.5263158 1
#> PIK3CA 1 0.4545455 0.5263158 1
#> PTPRD 1 0.4545455 0.5263158 1
#> PTPRT 1 0.4545455 0.5263158 1
#> RB1 1 0.4545455 0.5263158 1
#> RBM10 1 0.4545455 0.5263158 1
#> SETBP1 1 0.4545455 0.5263158 1
#> SETD2 1 0.4545455 0.5263158 1
#> SMAD4 1 0.4545455 0.5263158 1
#> SMARCA4 1 0.4545455 0.5263158 1
#> STK11 1 0.4545455 0.5263158 1
#> TP53 1 0.4545455 0.5263158 1
#> U2AF1 1 0.4545455 0.5263158 1
#> TCGA-75-5147-01 TCGA-75-6206-01 TCGA-75-6211-01 TCGA-75-6214-01
#> ARID1A 1 1 0.7692308 0.5263158
#> ATM 1 1 0.7692308 0.5263158
#> BRAF 1 1 0.7692308 0.5263158
#> CDKN2A 1 1 0.7692308 0.5263158
#> CMTR2 1 1 0.7692308 0.5263158
#> CTNNB1 1 1 0.7692308 0.5263158
#> EGFR 1 1 0.7692308 0.5263158
#> KEAP1 1 1 0.7692308 0.5263158
#> KRAS 1 1 0.7692308 0.5263158
#> MGA 1 1 0.7692308 0.5263158
#> NF1 1 1 0.7692308 0.5263158
#> PIK3CA 1 1 0.7692308 0.5263158
#> PTPRD 1 1 0.7692308 0.5263158
#> PTPRT 1 1 0.7692308 0.5263158
#> RB1 1 1 0.7692308 0.5263158
#> RBM10 1 1 0.7692308 0.5263158
#> SETBP1 1 1 0.7692308 0.5263158
#> SETD2 1 1 0.7692308 0.5263158
#> SMAD4 1 1 0.7692308 0.5263158
#> SMARCA4 1 1 0.7692308 0.5263158
#> STK11 1 1 0.7692308 0.5263158
#> TP53 1 1 0.7692308 0.5263158
#> U2AF1 1 1 0.7692308 0.5263158
#> TCGA-75-7027-01 TCGA-75-7030-01 TCGA-78-7145-01 TCGA-78-7146-01
#> ARID1A 0.7692308 1 1 0.7692308
#> ATM 0.7692308 1 1 0.7692308
#> BRAF 0.7692308 1 1 0.7692308
#> CDKN2A 0.7692308 1 1 0.7692308
#> CMTR2 0.7692308 1 1 0.7692308
#> CTNNB1 0.7692308 1 1 0.7692308
#> EGFR 0.7692308 1 1 0.7692308
#> KEAP1 0.7692308 1 1 0.7692308
#> KRAS 0.7692308 1 1 0.7692308
#> MGA 0.7692308 1 1 0.7692308
#> NF1 0.7692308 1 1 0.7692308
#> PIK3CA 0.7692308 1 1 0.7692308
#> PTPRD 0.7692308 1 1 0.7692308
#> PTPRT 0.7692308 1 1 0.7692308
#> RB1 0.7692308 1 1 0.7692308
#> RBM10 0.7692308 1 1 0.7692308
#> SETBP1 0.7692308 1 1 0.7692308
#> SETD2 0.7692308 1 1 0.7692308
#> SMAD4 0.7692308 1 1 0.7692308
#> SMARCA4 0.7692308 1 1 0.7692308
#> STK11 0.7692308 1 1 0.7692308
#> TP53 0.7692308 1 1 0.7692308
#> U2AF1 0.7692308 1 1 0.7692308
#> TCGA-78-7147-01 TCGA-78-7148-01 TCGA-78-7149-01 TCGA-78-7150-01
#> ARID1A 0.7692308 0.7692308 1 0.7692308
#> ATM 0.7692308 0.7692308 1 0.7692308
#> BRAF 0.7692308 0.7692308 1 0.7692308
#> CDKN2A 0.7692308 0.7692308 1 0.7692308
#> CMTR2 0.7692308 0.7692308 1 0.7692308
#> CTNNB1 0.7692308 0.7692308 1 0.7692308
#> EGFR 0.7692308 0.7692308 1 0.7692308
#> KEAP1 0.7692308 0.7692308 1 0.7692308
#> KRAS 0.7692308 0.7692308 1 0.7692308
#> MGA 0.7692308 0.7692308 1 0.7692308
#> NF1 0.7692308 0.7692308 1 0.7692308
#> PIK3CA 0.7692308 0.7692308 1 0.7692308
#> PTPRD 0.7692308 0.7692308 1 0.7692308
#> PTPRT 0.7692308 0.7692308 1 0.7692308
#> RB1 0.7692308 0.7692308 1 0.7692308
#> RBM10 0.7692308 0.7692308 1 0.7692308
#> SETBP1 0.7692308 0.7692308 1 0.7692308
#> SETD2 0.7692308 0.7692308 1 0.7692308
#> SMAD4 0.7692308 0.7692308 1 0.7692308
#> SMARCA4 0.7692308 0.7692308 1 0.7692308
#> STK11 0.7692308 0.7692308 1 0.7692308
#> TP53 0.7692308 0.7692308 1 0.7692308
#> U2AF1 0.7692308 0.7692308 1 0.7692308
#> TCGA-78-7152-01 TCGA-78-7153-01 TCGA-78-7155-01 TCGA-78-7158-01
#> ARID1A 1 1 0.3225806 0.7692308
#> ATM 1 1 0.3225806 0.7692308
#> BRAF 1 1 0.3225806 0.7692308
#> CDKN2A 1 1 0.3225806 0.7692308
#> CMTR2 1 1 0.3225806 0.7692308
#> CTNNB1 1 1 0.3225806 0.7692308
#> EGFR 1 1 0.3225806 0.7692308
#> KEAP1 1 1 0.3225806 0.7692308
#> KRAS 1 1 0.3225806 0.7692308
#> MGA 1 1 0.3225806 0.7692308
#> NF1 1 1 0.3225806 0.7692308
#> PIK3CA 1 1 0.3225806 0.7692308
#> PTPRD 1 1 0.3225806 0.7692308
#> PTPRT 1 1 0.3225806 0.7692308
#> RB1 1 1 0.3225806 0.7692308
#> RBM10 1 1 0.3225806 0.7692308
#> SETBP1 1 1 0.3225806 0.7692308
#> SETD2 1 1 0.3225806 0.7692308
#> SMAD4 1 1 0.3225806 0.7692308
#> SMARCA4 1 1 0.3225806 0.7692308
#> STK11 1 1 0.3225806 0.7692308
#> TP53 1 1 0.3225806 0.7692308
#> U2AF1 1 1 0.3225806 0.7692308
#> TCGA-78-7159-01 TCGA-78-7160-01 TCGA-78-7161-01 TCGA-78-7166-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-78-7167-01 TCGA-78-7220-01 TCGA-78-7537-01 TCGA-78-7539-01
#> ARID1A 1 0.5263158 1 0.625
#> ATM 1 0.5263158 1 0.625
#> BRAF 1 0.5263158 1 0.625
#> CDKN2A 1 0.5263158 1 0.625
#> CMTR2 1 0.5263158 1 0.625
#> CTNNB1 1 0.5263158 1 0.625
#> EGFR 1 0.5263158 1 0.625
#> KEAP1 1 0.5263158 1 0.625
#> KRAS 1 0.5263158 1 0.625
#> MGA 1 0.5263158 1 0.625
#> NF1 1 0.5263158 1 0.625
#> PIK3CA 1 0.5263158 1 0.625
#> PTPRD 1 0.5263158 1 0.625
#> PTPRT 1 0.5263158 1 0.625
#> RB1 1 0.5263158 1 0.625
#> RBM10 1 0.5263158 1 0.625
#> SETBP1 1 0.5263158 1 0.625
#> SETD2 1 0.5263158 1 0.625
#> SMAD4 1 0.5263158 1 0.625
#> SMARCA4 1 0.5263158 1 0.625
#> STK11 1 0.5263158 1 0.625
#> TP53 1 0.5263158 1 0.625
#> U2AF1 1 0.5263158 1 0.625
#> TCGA-78-7540-01 TCGA-78-7633-01 TCGA-78-8640-01 TCGA-78-8655-01
#> ARID1A 0.7692308 1 0.5263158 1
#> ATM 0.7692308 1 0.5263158 1
#> BRAF 0.7692308 1 0.5263158 1
#> CDKN2A 0.7692308 1 0.5263158 1
#> CMTR2 0.7692308 1 0.5263158 1
#> CTNNB1 0.7692308 1 0.5263158 1
#> EGFR 0.7692308 1 0.5263158 1
#> KEAP1 0.7692308 1 0.5263158 1
#> KRAS 0.7692308 1 0.5263158 1
#> MGA 0.7692308 1 0.5263158 1
#> NF1 0.7692308 1 0.5263158 1
#> PIK3CA 0.7692308 1 0.5263158 1
#> PTPRD 0.7692308 1 0.5263158 1
#> PTPRT 0.7692308 1 0.5263158 1
#> RB1 0.7692308 1 0.5263158 1
#> RBM10 0.7692308 1 0.5263158 1
#> SETBP1 0.7692308 1 0.5263158 1
#> SETD2 0.7692308 1 0.5263158 1
#> SMAD4 0.7692308 1 0.5263158 1
#> SMARCA4 0.7692308 1 0.5263158 1
#> STK11 0.7692308 1 0.5263158 1
#> TP53 0.7692308 1 0.5263158 1
#> U2AF1 0.7692308 1 0.5263158 1
#> TCGA-78-8660-01 TCGA-78-8662-01 TCGA-80-5607-01 TCGA-80-5608-01
#> ARID1A 0.7692308 0.4 1 0.7692308
#> ATM 0.7692308 0.4 1 0.7692308
#> BRAF 0.7692308 0.4 1 0.7692308
#> CDKN2A 0.7692308 0.4 1 0.7692308
#> CMTR2 0.7692308 0.4 1 0.7692308
#> CTNNB1 0.7692308 0.4 1 0.7692308
#> EGFR 0.7692308 0.4 1 0.7692308
#> KEAP1 0.7692308 0.4 1 0.7692308
#> KRAS 0.7692308 0.4 1 0.7692308
#> MGA 0.7692308 0.4 1 0.7692308
#> NF1 0.7692308 0.4 1 0.7692308
#> PIK3CA 0.7692308 0.4 1 0.7692308
#> PTPRD 0.7692308 0.4 1 0.7692308
#> PTPRT 0.7692308 0.4 1 0.7692308
#> RB1 0.7692308 0.4 1 0.7692308
#> RBM10 0.7692308 0.4 1 0.7692308
#> SETBP1 0.7692308 0.4 1 0.7692308
#> SETD2 0.7692308 0.4 1 0.7692308
#> SMAD4 0.7692308 0.4 1 0.7692308
#> SMARCA4 0.7692308 0.4 1 0.7692308
#> STK11 0.7692308 0.4 1 0.7692308
#> TP53 0.7692308 0.4 1 0.7692308
#> U2AF1 0.7692308 0.4 1 0.7692308
#> TCGA-83-5908-01 TCGA-86-6851-01 TCGA-86-7711-01 TCGA-86-7713-01
#> ARID1A 0.7692308 0.4545455 0.7692308 1
#> ATM 0.7692308 0.4545455 0.7692308 1
#> BRAF 0.7692308 0.4545455 0.7692308 1
#> CDKN2A 0.7692308 0.4545455 0.7692308 1
#> CMTR2 0.7692308 0.4545455 0.7692308 1
#> CTNNB1 0.7692308 0.4545455 0.7692308 1
#> EGFR 0.7692308 0.4545455 0.7692308 1
#> KEAP1 0.7692308 0.4545455 0.7692308 1
#> KRAS 0.7692308 0.4545455 0.7692308 1
#> MGA 0.7692308 0.4545455 0.7692308 1
#> NF1 0.7692308 0.4545455 0.7692308 1
#> PIK3CA 0.7692308 0.4545455 0.7692308 1
#> PTPRD 0.7692308 0.4545455 0.7692308 1
#> PTPRT 0.7692308 0.4545455 0.7692308 1
#> RB1 0.7692308 0.4545455 0.7692308 1
#> RBM10 0.7692308 0.4545455 0.7692308 1
#> SETBP1 0.7692308 0.4545455 0.7692308 1
#> SETD2 0.7692308 0.4545455 0.7692308 1
#> SMAD4 0.7692308 0.4545455 0.7692308 1
#> SMARCA4 0.7692308 0.4545455 0.7692308 1
#> STK11 0.7692308 0.4545455 0.7692308 1
#> TP53 0.7692308 0.4545455 0.7692308 1
#> U2AF1 0.7692308 0.4545455 0.7692308 1
#> TCGA-86-7714-01 TCGA-86-7953-01 TCGA-86-7954-01 TCGA-86-8054-01
#> ARID1A 1 1 1 0.7692308
#> ATM 1 1 1 0.7692308
#> BRAF 1 1 1 0.7692308
#> CDKN2A 1 1 1 0.7692308
#> CMTR2 1 1 1 0.7692308
#> CTNNB1 1 1 1 0.7692308
#> EGFR 1 1 1 0.7692308
#> KEAP1 1 1 1 0.7692308
#> KRAS 1 1 1 0.7692308
#> MGA 1 1 1 0.7692308
#> NF1 1 1 1 0.7692308
#> PIK3CA 1 1 1 0.7692308
#> PTPRD 1 1 1 0.7692308
#> PTPRT 1 1 1 0.7692308
#> RB1 1 1 1 0.7692308
#> RBM10 1 1 1 0.7692308
#> SETBP1 1 1 1 0.7692308
#> SETD2 1 1 1 0.7692308
#> SMAD4 1 1 1 0.7692308
#> SMARCA4 1 1 1 0.7692308
#> STK11 1 1 1 0.7692308
#> TP53 1 1 1 0.7692308
#> U2AF1 1 1 1 0.7692308
#> TCGA-86-8055-01 TCGA-86-8056-01 TCGA-86-8074-01 TCGA-86-8075-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-86-8076-01 TCGA-86-8278-01 TCGA-86-8279-01 TCGA-86-8280-01
#> ARID1A 1 1 0.625 1
#> ATM 1 1 0.625 1
#> BRAF 1 1 0.625 1
#> CDKN2A 1 1 0.625 1
#> CMTR2 1 1 0.625 1
#> CTNNB1 1 1 0.625 1
#> EGFR 1 1 0.625 1
#> KEAP1 1 1 0.625 1
#> KRAS 1 1 0.625 1
#> MGA 1 1 0.625 1
#> NF1 1 1 0.625 1
#> PIK3CA 1 1 0.625 1
#> PTPRD 1 1 0.625 1
#> PTPRT 1 1 0.625 1
#> RB1 1 1 0.625 1
#> RBM10 1 1 0.625 1
#> SETBP1 1 1 0.625 1
#> SETD2 1 1 0.625 1
#> SMAD4 1 1 0.625 1
#> SMARCA4 1 1 0.625 1
#> STK11 1 1 0.625 1
#> TP53 1 1 0.625 1
#> U2AF1 1 1 0.625 1
#> TCGA-86-8281-01 TCGA-86-8359-01 TCGA-86-8585-01 TCGA-86-8668-01
#> ARID1A 0.7692308 1 0.625 1
#> ATM 0.7692308 1 0.625 1
#> BRAF 0.7692308 1 0.625 1
#> CDKN2A 0.7692308 1 0.625 1
#> CMTR2 0.7692308 1 0.625 1
#> CTNNB1 0.7692308 1 0.625 1
#> EGFR 0.7692308 1 0.625 1
#> KEAP1 0.7692308 1 0.625 1
#> KRAS 0.7692308 1 0.625 1
#> MGA 0.7692308 1 0.625 1
#> NF1 0.7692308 1 0.625 1
#> PIK3CA 0.7692308 1 0.625 1
#> PTPRD 0.7692308 1 0.625 1
#> PTPRT 0.7692308 1 0.625 1
#> RB1 0.7692308 1 0.625 1
#> RBM10 0.7692308 1 0.625 1
#> SETBP1 0.7692308 1 0.625 1
#> SETD2 0.7692308 1 0.625 1
#> SMAD4 0.7692308 1 0.625 1
#> SMARCA4 0.7692308 1 0.625 1
#> STK11 0.7692308 1 0.625 1
#> TP53 0.7692308 1 0.625 1
#> U2AF1 0.7692308 1 0.625 1
#> TCGA-86-8673-01 TCGA-86-8674-01 TCGA-86-A456-01 TCGA-86-A4JF-01
#> ARID1A 0.625 0.7692308 0.7692308 0.3571429
#> ATM 0.625 0.7692308 0.7692308 0.3571429
#> BRAF 0.625 0.7692308 0.7692308 0.3571429
#> CDKN2A 0.625 0.7692308 0.7692308 0.3571429
#> CMTR2 0.625 0.7692308 0.7692308 0.3571429
#> CTNNB1 0.625 0.7692308 0.7692308 0.3571429
#> EGFR 0.625 0.7692308 0.7692308 0.3571429
#> KEAP1 0.625 0.7692308 0.7692308 0.3571429
#> KRAS 0.625 0.7692308 0.7692308 0.3571429
#> MGA 0.625 0.7692308 0.7692308 0.3571429
#> NF1 0.625 0.7692308 0.7692308 0.3571429
#> PIK3CA 0.625 0.7692308 0.7692308 0.3571429
#> PTPRD 0.625 0.7692308 0.7692308 0.3571429
#> PTPRT 0.625 0.7692308 0.7692308 0.3571429
#> RB1 0.625 0.7692308 0.7692308 0.3571429
#> RBM10 0.625 0.7692308 0.7692308 0.3571429
#> SETBP1 0.625 0.7692308 0.7692308 0.3571429
#> SETD2 0.625 0.7692308 0.7692308 0.3571429
#> SMAD4 0.625 0.7692308 0.7692308 0.3571429
#> SMARCA4 0.625 0.7692308 0.7692308 0.3571429
#> STK11 0.625 0.7692308 0.7692308 0.3571429
#> TP53 0.625 0.7692308 0.7692308 0.3571429
#> U2AF1 0.625 0.7692308 0.7692308 0.3571429
#> TCGA-86-A4P7-01 TCGA-91-6828-01 TCGA-91-6829-01 TCGA-91-6830-01
#> ARID1A 1 0.7692308 0.5263158 0.7692308
#> ATM 1 0.7692308 0.5263158 0.7692308
#> BRAF 1 0.7692308 0.5263158 0.7692308
#> CDKN2A 1 0.7692308 0.5263158 0.7692308
#> CMTR2 1 0.7692308 0.5263158 0.7692308
#> CTNNB1 1 0.7692308 0.5263158 0.7692308
#> EGFR 1 0.7692308 0.5263158 0.7692308
#> KEAP1 1 0.7692308 0.5263158 0.7692308
#> KRAS 1 0.7692308 0.5263158 0.7692308
#> MGA 1 0.7692308 0.5263158 0.7692308
#> NF1 1 0.7692308 0.5263158 0.7692308
#> PIK3CA 1 0.7692308 0.5263158 0.7692308
#> PTPRD 1 0.7692308 0.5263158 0.7692308
#> PTPRT 1 0.7692308 0.5263158 0.7692308
#> RB1 1 0.7692308 0.5263158 0.7692308
#> RBM10 1 0.7692308 0.5263158 0.7692308
#> SETBP1 1 0.7692308 0.5263158 0.7692308
#> SETD2 1 0.7692308 0.5263158 0.7692308
#> SMAD4 1 0.7692308 0.5263158 0.7692308
#> SMARCA4 1 0.7692308 0.5263158 0.7692308
#> STK11 1 0.7692308 0.5263158 0.7692308
#> TP53 1 0.7692308 0.5263158 0.7692308
#> U2AF1 1 0.7692308 0.5263158 0.7692308
#> TCGA-91-6835-01 TCGA-91-6836-01 TCGA-91-6840-01 TCGA-91-6847-01
#> ARID1A 1 0.625 1 1
#> ATM 1 0.625 1 1
#> BRAF 1 0.625 1 1
#> CDKN2A 1 0.625 1 1
#> CMTR2 1 0.625 1 1
#> CTNNB1 1 0.625 1 1
#> EGFR 1 0.625 1 1
#> KEAP1 1 0.625 1 1
#> KRAS 1 0.625 1 1
#> MGA 1 0.625 1 1
#> NF1 1 0.625 1 1
#> PIK3CA 1 0.625 1 1
#> PTPRD 1 0.625 1 1
#> PTPRT 1 0.625 1 1
#> RB1 1 0.625 1 1
#> RBM10 1 0.625 1 1
#> SETBP1 1 0.625 1 1
#> SETD2 1 0.625 1 1
#> SMAD4 1 0.625 1 1
#> SMARCA4 1 0.625 1 1
#> STK11 1 0.625 1 1
#> TP53 1 0.625 1 1
#> U2AF1 1 0.625 1 1
#> TCGA-91-6848-01 TCGA-91-6849-01 TCGA-91-A4BD-01 TCGA-93-7347-01
#> ARID1A 0.625 1 1 1
#> ATM 0.625 1 1 1
#> BRAF 0.625 1 1 1
#> CDKN2A 0.625 1 1 1
#> CMTR2 0.625 1 1 1
#> CTNNB1 0.625 1 1 1
#> EGFR 0.625 1 1 1
#> KEAP1 0.625 1 1 1
#> KRAS 0.625 1 1 1
#> MGA 0.625 1 1 1
#> NF1 0.625 1 1 1
#> PIK3CA 0.625 1 1 1
#> PTPRD 0.625 1 1 1
#> PTPRT 0.625 1 1 1
#> RB1 0.625 1 1 1
#> RBM10 0.625 1 1 1
#> SETBP1 0.625 1 1 1
#> SETD2 0.625 1 1 1
#> SMAD4 0.625 1 1 1
#> SMARCA4 0.625 1 1 1
#> STK11 0.625 1 1 1
#> TP53 0.625 1 1 1
#> U2AF1 0.625 1 1 1
#> TCGA-93-7348-01 TCGA-93-8067-01 TCGA-93-A4JN-01 TCGA-93-A4JO-01
#> ARID1A 1 0.625 1 1
#> ATM 1 0.625 1 1
#> BRAF 1 0.625 1 1
#> CDKN2A 1 0.625 1 1
#> CMTR2 1 0.625 1 1
#> CTNNB1 1 0.625 1 1
#> EGFR 1 0.625 1 1
#> KEAP1 1 0.625 1 1
#> KRAS 1 0.625 1 1
#> MGA 1 0.625 1 1
#> NF1 1 0.625 1 1
#> PIK3CA 1 0.625 1 1
#> PTPRD 1 0.625 1 1
#> PTPRT 1 0.625 1 1
#> RB1 1 0.625 1 1
#> RBM10 1 0.625 1 1
#> SETBP1 1 0.625 1 1
#> SETD2 1 0.625 1 1
#> SMAD4 1 0.625 1 1
#> SMARCA4 1 0.625 1 1
#> STK11 1 0.625 1 1
#> TP53 1 0.625 1 1
#> U2AF1 1 0.625 1 1
#> TCGA-93-A4JP-01 TCGA-95-7039-01 TCGA-95-7043-01 TCGA-95-7562-01
#> ARID1A 1 0.3571429 0.4 0.625
#> ATM 1 0.3571429 0.4 0.625
#> BRAF 1 0.3571429 0.4 0.625
#> CDKN2A 1 0.3571429 0.4 0.625
#> CMTR2 1 0.3571429 0.4 0.625
#> CTNNB1 1 0.3571429 0.4 0.625
#> EGFR 1 0.3571429 0.4 0.625
#> KEAP1 1 0.3571429 0.4 0.625
#> KRAS 1 0.3571429 0.4 0.625
#> MGA 1 0.3571429 0.4 0.625
#> NF1 1 0.3571429 0.4 0.625
#> PIK3CA 1 0.3571429 0.4 0.625
#> PTPRD 1 0.3571429 0.4 0.625
#> PTPRT 1 0.3571429 0.4 0.625
#> RB1 1 0.3571429 0.4 0.625
#> RBM10 1 0.3571429 0.4 0.625
#> SETBP1 1 0.3571429 0.4 0.625
#> SETD2 1 0.3571429 0.4 0.625
#> SMAD4 1 0.3571429 0.4 0.625
#> SMARCA4 1 0.3571429 0.4 0.625
#> STK11 1 0.3571429 0.4 0.625
#> TP53 1 0.3571429 0.4 0.625
#> U2AF1 1 0.3571429 0.4 0.625
#> TCGA-95-7567-01 TCGA-95-7944-01 TCGA-95-7947-01 TCGA-95-7948-01
#> ARID1A 0.4545455 0.7692308 0.625 1
#> ATM 0.4545455 0.7692308 0.625 1
#> BRAF 0.4545455 0.7692308 0.625 1
#> CDKN2A 0.4545455 0.7692308 0.625 1
#> CMTR2 0.4545455 0.7692308 0.625 1
#> CTNNB1 0.4545455 0.7692308 0.625 1
#> EGFR 0.4545455 0.7692308 0.625 1
#> KEAP1 0.4545455 0.7692308 0.625 1
#> KRAS 0.4545455 0.7692308 0.625 1
#> MGA 0.4545455 0.7692308 0.625 1
#> NF1 0.4545455 0.7692308 0.625 1
#> PIK3CA 0.4545455 0.7692308 0.625 1
#> PTPRD 0.4545455 0.7692308 0.625 1
#> PTPRT 0.4545455 0.7692308 0.625 1
#> RB1 0.4545455 0.7692308 0.625 1
#> RBM10 0.4545455 0.7692308 0.625 1
#> SETBP1 0.4545455 0.7692308 0.625 1
#> SETD2 0.4545455 0.7692308 0.625 1
#> SMAD4 0.4545455 0.7692308 0.625 1
#> SMARCA4 0.4545455 0.7692308 0.625 1
#> STK11 0.4545455 0.7692308 0.625 1
#> TP53 0.4545455 0.7692308 0.625 1
#> U2AF1 0.4545455 0.7692308 0.625 1
#> TCGA-95-A4VK-01 TCGA-95-A4VN-01 TCGA-95-A4VP-01 TCGA-97-7546-01
#> ARID1A 0.7692308 0.625 1 0.7692308
#> ATM 0.7692308 0.625 1 0.7692308
#> BRAF 0.7692308 0.625 1 0.7692308
#> CDKN2A 0.7692308 0.625 1 0.7692308
#> CMTR2 0.7692308 0.625 1 0.7692308
#> CTNNB1 0.7692308 0.625 1 0.7692308
#> EGFR 0.7692308 0.625 1 0.7692308
#> KEAP1 0.7692308 0.625 1 0.7692308
#> KRAS 0.7692308 0.625 1 0.7692308
#> MGA 0.7692308 0.625 1 0.7692308
#> NF1 0.7692308 0.625 1 0.7692308
#> PIK3CA 0.7692308 0.625 1 0.7692308
#> PTPRD 0.7692308 0.625 1 0.7692308
#> PTPRT 0.7692308 0.625 1 0.7692308
#> RB1 0.7692308 0.625 1 0.7692308
#> RBM10 0.7692308 0.625 1 0.7692308
#> SETBP1 0.7692308 0.625 1 0.7692308
#> SETD2 0.7692308 0.625 1 0.7692308
#> SMAD4 0.7692308 0.625 1 0.7692308
#> SMARCA4 0.7692308 0.625 1 0.7692308
#> STK11 0.7692308 0.625 1 0.7692308
#> TP53 0.7692308 0.625 1 0.7692308
#> U2AF1 0.7692308 0.625 1 0.7692308
#> TCGA-97-7553-01 TCGA-97-7554-01 TCGA-97-7937-01 TCGA-97-7938-01
#> ARID1A 1 0.625 0.625 0.7692308
#> ATM 1 0.625 0.625 0.7692308
#> BRAF 1 0.625 0.625 0.7692308
#> CDKN2A 1 0.625 0.625 0.7692308
#> CMTR2 1 0.625 0.625 0.7692308
#> CTNNB1 1 0.625 0.625 0.7692308
#> EGFR 1 0.625 0.625 0.7692308
#> KEAP1 1 0.625 0.625 0.7692308
#> KRAS 1 0.625 0.625 0.7692308
#> MGA 1 0.625 0.625 0.7692308
#> NF1 1 0.625 0.625 0.7692308
#> PIK3CA 1 0.625 0.625 0.7692308
#> PTPRD 1 0.625 0.625 0.7692308
#> PTPRT 1 0.625 0.625 0.7692308
#> RB1 1 0.625 0.625 0.7692308
#> RBM10 1 0.625 0.625 0.7692308
#> SETBP1 1 0.625 0.625 0.7692308
#> SETD2 1 0.625 0.625 0.7692308
#> SMAD4 1 0.625 0.625 0.7692308
#> SMARCA4 1 0.625 0.625 0.7692308
#> STK11 1 0.625 0.625 0.7692308
#> TP53 1 0.625 0.625 0.7692308
#> U2AF1 1 0.625 0.625 0.7692308
#> TCGA-97-7941-01 TCGA-97-8171-01 TCGA-97-8174-01 TCGA-97-8175-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-97-8176-01 TCGA-97-8177-01 TCGA-97-8179-01 TCGA-97-8547-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-97-A4LX-01 TCGA-97-A4M0-01 TCGA-97-A4M1-01 TCGA-97-A4M3-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-97-A4M5-01 TCGA-97-A4M7-01 TCGA-99-8025-01 TCGA-99-8028-01
#> ARID1A 1 0.7692308 0.625 0.625
#> ATM 1 0.7692308 0.625 0.625
#> BRAF 1 0.7692308 0.625 0.625
#> CDKN2A 1 0.7692308 0.625 0.625
#> CMTR2 1 0.7692308 0.625 0.625
#> CTNNB1 1 0.7692308 0.625 0.625
#> EGFR 1 0.7692308 0.625 0.625
#> KEAP1 1 0.7692308 0.625 0.625
#> KRAS 1 0.7692308 0.625 0.625
#> MGA 1 0.7692308 0.625 0.625
#> NF1 1 0.7692308 0.625 0.625
#> PIK3CA 1 0.7692308 0.625 0.625
#> PTPRD 1 0.7692308 0.625 0.625
#> PTPRT 1 0.7692308 0.625 0.625
#> RB1 1 0.7692308 0.625 0.625
#> RBM10 1 0.7692308 0.625 0.625
#> SETBP1 1 0.7692308 0.625 0.625
#> SETD2 1 0.7692308 0.625 0.625
#> SMAD4 1 0.7692308 0.625 0.625
#> SMARCA4 1 0.7692308 0.625 0.625
#> STK11 1 0.7692308 0.625 0.625
#> TP53 1 0.7692308 0.625 0.625
#> U2AF1 1 0.7692308 0.625 0.625
#> TCGA-99-8032-01 TCGA-99-8033-01 TCGA-J2-8194-01 TCGA-J2-A4AD-01
#> ARID1A 0.7692308 1 1 0.7692308
#> ATM 0.7692308 1 1 0.7692308
#> BRAF 0.7692308 1 1 0.7692308
#> CDKN2A 0.7692308 1 1 0.7692308
#> CMTR2 0.7692308 1 1 0.7692308
#> CTNNB1 0.7692308 1 1 0.7692308
#> EGFR 0.7692308 1 1 0.7692308
#> KEAP1 0.7692308 1 1 0.7692308
#> KRAS 0.7692308 1 1 0.7692308
#> MGA 0.7692308 1 1 0.7692308
#> NF1 0.7692308 1 1 0.7692308
#> PIK3CA 0.7692308 1 1 0.7692308
#> PTPRD 0.7692308 1 1 0.7692308
#> PTPRT 0.7692308 1 1 0.7692308
#> RB1 0.7692308 1 1 0.7692308
#> RBM10 0.7692308 1 1 0.7692308
#> SETBP1 0.7692308 1 1 0.7692308
#> SETD2 0.7692308 1 1 0.7692308
#> SMAD4 0.7692308 1 1 0.7692308
#> SMARCA4 0.7692308 1 1 0.7692308
#> STK11 0.7692308 1 1 0.7692308
#> TP53 0.7692308 1 1 0.7692308
#> U2AF1 0.7692308 1 1 0.7692308
#> TCGA-J2-A4AG-01 TCGA-L4-A4E5-01 TCGA-L9-A443-01 TCGA-L9-A444-01
#> ARID1A 1 0.7692308 0.7692308 0.625
#> ATM 1 0.7692308 0.7692308 0.625
#> BRAF 1 0.7692308 0.7692308 0.625
#> CDKN2A 1 0.7692308 0.7692308 0.625
#> CMTR2 1 0.7692308 0.7692308 0.625
#> CTNNB1 1 0.7692308 0.7692308 0.625
#> EGFR 1 0.7692308 0.7692308 0.625
#> KEAP1 1 0.7692308 0.7692308 0.625
#> KRAS 1 0.7692308 0.7692308 0.625
#> MGA 1 0.7692308 0.7692308 0.625
#> NF1 1 0.7692308 0.7692308 0.625
#> PIK3CA 1 0.7692308 0.7692308 0.625
#> PTPRD 1 0.7692308 0.7692308 0.625
#> PTPRT 1 0.7692308 0.7692308 0.625
#> RB1 1 0.7692308 0.7692308 0.625
#> RBM10 1 0.7692308 0.7692308 0.625
#> SETBP1 1 0.7692308 0.7692308 0.625
#> SETD2 1 0.7692308 0.7692308 0.625
#> SMAD4 1 0.7692308 0.7692308 0.625
#> SMARCA4 1 0.7692308 0.7692308 0.625
#> STK11 1 0.7692308 0.7692308 0.625
#> TP53 1 0.7692308 0.7692308 0.625
#> U2AF1 1 0.7692308 0.7692308 0.625
#> TCGA-L9-A50W-01 TCGA-L9-A5IP-01 TCGA-L9-A743-01 TCGA-L9-A7SV-01
#> ARID1A 1 0.7692308 1 0.3225806
#> ATM 1 0.7692308 1 0.3225806
#> BRAF 1 0.7692308 1 0.3225806
#> CDKN2A 1 0.7692308 1 0.3225806
#> CMTR2 1 0.7692308 1 0.3225806
#> CTNNB1 1 0.7692308 1 0.3225806
#> EGFR 1 0.7692308 1 0.3225806
#> KEAP1 1 0.7692308 1 0.3225806
#> KRAS 1 0.7692308 1 0.3225806
#> MGA 1 0.7692308 1 0.3225806
#> NF1 1 0.7692308 1 0.3225806
#> PIK3CA 1 0.7692308 1 0.3225806
#> PTPRD 1 0.7692308 1 0.3225806
#> PTPRT 1 0.7692308 1 0.3225806
#> RB1 1 0.7692308 1 0.3225806
#> RBM10 1 0.7692308 1 0.3225806
#> SETBP1 1 0.7692308 1 0.3225806
#> SETD2 1 0.7692308 1 0.3225806
#> SMAD4 1 0.7692308 1 0.3225806
#> SMARCA4 1 0.7692308 1 0.3225806
#> STK11 1 0.7692308 1 0.3225806
#> TP53 1 0.7692308 1 0.3225806
#> U2AF1 1 0.7692308 1 0.3225806
#> TCGA-L9-A8F4-01 TCGA-MN-A4N1-01 TCGA-MN-A4N4-01 TCGA-MN-A4N5-01
#> ARID1A 0.5263158 0.625 0.3571429 0.625
#> ATM 0.5263158 0.625 0.3571429 0.625
#> BRAF 0.5263158 0.625 0.3571429 0.625
#> CDKN2A 0.5263158 0.625 0.3571429 0.625
#> CMTR2 0.5263158 0.625 0.3571429 0.625
#> CTNNB1 0.5263158 0.625 0.3571429 0.625
#> EGFR 0.5263158 0.625 0.3571429 0.625
#> KEAP1 0.5263158 0.625 0.3571429 0.625
#> KRAS 0.5263158 0.625 0.3571429 0.625
#> MGA 0.5263158 0.625 0.3571429 0.625
#> NF1 0.5263158 0.625 0.3571429 0.625
#> PIK3CA 0.5263158 0.625 0.3571429 0.625
#> PTPRD 0.5263158 0.625 0.3571429 0.625
#> PTPRT 0.5263158 0.625 0.3571429 0.625
#> RB1 0.5263158 0.625 0.3571429 0.625
#> RBM10 0.5263158 0.625 0.3571429 0.625
#> SETBP1 0.5263158 0.625 0.3571429 0.625
#> SETD2 0.5263158 0.625 0.3571429 0.625
#> SMAD4 0.5263158 0.625 0.3571429 0.625
#> SMARCA4 0.5263158 0.625 0.3571429 0.625
#> STK11 0.5263158 0.625 0.3571429 0.625
#> TP53 0.5263158 0.625 0.3571429 0.625
#> U2AF1 0.5263158 0.625 0.3571429 0.625
#> TCGA-MP-A4SV-01 TCGA-MP-A4SW-01 TCGA-MP-A4SY-01 TCGA-MP-A4T4-01
#> ARID1A 0.7692308 1 1 0.7692308
#> ATM 0.7692308 1 1 0.7692308
#> BRAF 0.7692308 1 1 0.7692308
#> CDKN2A 0.7692308 1 1 0.7692308
#> CMTR2 0.7692308 1 1 0.7692308
#> CTNNB1 0.7692308 1 1 0.7692308
#> EGFR 0.7692308 1 1 0.7692308
#> KEAP1 0.7692308 1 1 0.7692308
#> KRAS 0.7692308 1 1 0.7692308
#> MGA 0.7692308 1 1 0.7692308
#> NF1 0.7692308 1 1 0.7692308
#> PIK3CA 0.7692308 1 1 0.7692308
#> PTPRD 0.7692308 1 1 0.7692308
#> PTPRT 0.7692308 1 1 0.7692308
#> RB1 0.7692308 1 1 0.7692308
#> RBM10 0.7692308 1 1 0.7692308
#> SETBP1 0.7692308 1 1 0.7692308
#> SETD2 0.7692308 1 1 0.7692308
#> SMAD4 0.7692308 1 1 0.7692308
#> SMARCA4 0.7692308 1 1 0.7692308
#> STK11 0.7692308 1 1 0.7692308
#> TP53 0.7692308 1 1 0.7692308
#> U2AF1 0.7692308 1 1 0.7692308
#> TCGA-MP-A4T7-01 TCGA-MP-A4T8-01 TCGA-MP-A4T9-01 TCGA-MP-A4TA-01
#> ARID1A 1 1 1 0.7692308
#> ATM 1 1 1 0.7692308
#> BRAF 1 1 1 0.7692308
#> CDKN2A 1 1 1 0.7692308
#> CMTR2 1 1 1 0.7692308
#> CTNNB1 1 1 1 0.7692308
#> EGFR 1 1 1 0.7692308
#> KEAP1 1 1 1 0.7692308
#> KRAS 1 1 1 0.7692308
#> MGA 1 1 1 0.7692308
#> NF1 1 1 1 0.7692308
#> PIK3CA 1 1 1 0.7692308
#> PTPRD 1 1 1 0.7692308
#> PTPRT 1 1 1 0.7692308
#> RB1 1 1 1 0.7692308
#> RBM10 1 1 1 0.7692308
#> SETBP1 1 1 1 0.7692308
#> SETD2 1 1 1 0.7692308
#> SMAD4 1 1 1 0.7692308
#> SMARCA4 1 1 1 0.7692308
#> STK11 1 1 1 0.7692308
#> TP53 1 1 1 0.7692308
#> U2AF1 1 1 1 0.7692308
#> TCGA-MP-A4TD-01 TCGA-MP-A4TE-01 TCGA-MP-A4TF-01 TCGA-MP-A4TI-01
#> ARID1A 1 1 0.7692308 0.7692308
#> ATM 1 1 0.7692308 0.7692308
#> BRAF 1 1 0.7692308 0.7692308
#> CDKN2A 1 1 0.7692308 0.7692308
#> CMTR2 1 1 0.7692308 0.7692308
#> CTNNB1 1 1 0.7692308 0.7692308
#> EGFR 1 1 0.7692308 0.7692308
#> KEAP1 1 1 0.7692308 0.7692308
#> KRAS 1 1 0.7692308 0.7692308
#> MGA 1 1 0.7692308 0.7692308
#> NF1 1 1 0.7692308 0.7692308
#> PIK3CA 1 1 0.7692308 0.7692308
#> PTPRD 1 1 0.7692308 0.7692308
#> PTPRT 1 1 0.7692308 0.7692308
#> RB1 1 1 0.7692308 0.7692308
#> RBM10 1 1 0.7692308 0.7692308
#> SETBP1 1 1 0.7692308 0.7692308
#> SETD2 1 1 0.7692308 0.7692308
#> SMAD4 1 1 0.7692308 0.7692308
#> SMARCA4 1 1 0.7692308 0.7692308
#> STK11 1 1 0.7692308 0.7692308
#> TP53 1 1 0.7692308 0.7692308
#> U2AF1 1 1 0.7692308 0.7692308
#> TCGA-MP-A4TK-01 TCGA-NJ-A4YG-01 TCGA-NJ-A4YI-01 TCGA-NJ-A4YP-01
#> ARID1A 0.7692308 1 0.625 0.625
#> ATM 0.7692308 1 0.625 0.625
#> BRAF 0.7692308 1 0.625 0.625
#> CDKN2A 0.7692308 1 0.625 0.625
#> CMTR2 0.7692308 1 0.625 0.625
#> CTNNB1 0.7692308 1 0.625 0.625
#> EGFR 0.7692308 1 0.625 0.625
#> KEAP1 0.7692308 1 0.625 0.625
#> KRAS 0.7692308 1 0.625 0.625
#> MGA 0.7692308 1 0.625 0.625
#> NF1 0.7692308 1 0.625 0.625
#> PIK3CA 0.7692308 1 0.625 0.625
#> PTPRD 0.7692308 1 0.625 0.625
#> PTPRT 0.7692308 1 0.625 0.625
#> RB1 0.7692308 1 0.625 0.625
#> RBM10 0.7692308 1 0.625 0.625
#> SETBP1 0.7692308 1 0.625 0.625
#> SETD2 0.7692308 1 0.625 0.625
#> SMAD4 0.7692308 1 0.625 0.625
#> SMARCA4 0.7692308 1 0.625 0.625
#> STK11 0.7692308 1 0.625 0.625
#> TP53 0.7692308 1 0.625 0.625
#> U2AF1 0.7692308 1 0.625 0.625
#> TCGA-NJ-A4YQ-01 TCGA-NJ-A55O-01 TCGA-NJ-A55R-01 TCGA-05-4398-01
#> ARID1A 0.4 1 0.7692308 0.5263158
#> ATM 0.4 1 0.7692308 0.5263158
#> BRAF 0.4 1 0.7692308 0.5263158
#> CDKN2A 0.4 1 0.7692308 0.5263158
#> CMTR2 0.4 1 0.7692308 0.5263158
#> CTNNB1 0.4 1 0.7692308 0.5263158
#> EGFR 0.4 1 0.7692308 0.5263158
#> KEAP1 0.4 1 0.7692308 0.5263158
#> KRAS 0.4 1 0.7692308 0.5263158
#> MGA 0.4 1 0.7692308 0.5263158
#> NF1 0.4 1 0.7692308 0.5263158
#> PIK3CA 0.4 1 0.7692308 0.5263158
#> PTPRD 0.4 1 0.7692308 0.5263158
#> PTPRT 0.4 1 0.7692308 0.5263158
#> RB1 0.4 1 0.7692308 0.5263158
#> RBM10 0.4 1 0.7692308 0.5263158
#> SETBP1 0.4 1 0.7692308 0.5263158
#> SETD2 0.4 1 0.7692308 0.5263158
#> SMAD4 0.4 1 0.7692308 0.5263158
#> SMARCA4 0.4 1 0.7692308 0.5263158
#> STK11 0.4 1 0.7692308 0.5263158
#> TP53 0.4 1 0.7692308 0.5263158
#> U2AF1 0.4 1 0.7692308 0.5263158
#> TCGA-05-4402-01 TCGA-05-4424-01 TCGA-05-4426-01 TCGA-05-4434-01
#> ARID1A 1 0.5263158 1 1
#> ATM 1 0.5263158 1 1
#> BRAF 1 0.5263158 1 1
#> CDKN2A 1 0.5263158 1 1
#> CMTR2 1 0.5263158 1 1
#> CTNNB1 1 0.5263158 1 1
#> EGFR 1 0.5263158 1 1
#> KEAP1 1 0.5263158 1 1
#> KRAS 1 0.5263158 1 1
#> MGA 1 0.5263158 1 1
#> NF1 1 0.5263158 1 1
#> PIK3CA 1 0.5263158 1 1
#> PTPRD 1 0.5263158 1 1
#> PTPRT 1 0.5263158 1 1
#> RB1 1 0.5263158 1 1
#> RBM10 1 0.5263158 1 1
#> SETBP1 1 0.5263158 1 1
#> SETD2 1 0.5263158 1 1
#> SMAD4 1 0.5263158 1 1
#> SMARCA4 1 0.5263158 1 1
#> STK11 1 0.5263158 1 1
#> TP53 1 0.5263158 1 1
#> U2AF1 1 0.5263158 1 1
#> TCGA-05-5715-01 TCGA-38-4626-01 TCGA-38-4628-01 TCGA-38-7271-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-38-A44F-01 TCGA-44-2655-01 TCGA-44-2659-01 TCGA-44-3398-01
#> ARID1A 1 1 0.625 1
#> ATM 1 1 0.625 1
#> BRAF 1 1 0.625 1
#> CDKN2A 1 1 0.625 1
#> CMTR2 1 1 0.625 1
#> CTNNB1 1 1 0.625 1
#> EGFR 1 1 0.625 1
#> KEAP1 1 1 0.625 1
#> KRAS 1 1 0.625 1
#> MGA 1 1 0.625 1
#> NF1 1 1 0.625 1
#> PIK3CA 1 1 0.625 1
#> PTPRD 1 1 0.625 1
#> PTPRT 1 1 0.625 1
#> RB1 1 1 0.625 1
#> RBM10 1 1 0.625 1
#> SETBP1 1 1 0.625 1
#> SETD2 1 1 0.625 1
#> SMAD4 1 1 0.625 1
#> SMARCA4 1 1 0.625 1
#> STK11 1 1 0.625 1
#> TP53 1 1 0.625 1
#> U2AF1 1 1 0.625 1
#> TCGA-44-3918-01 TCGA-44-3919-01 TCGA-44-4112-01 TCGA-44-5644-01
#> ARID1A 0.4545455 1 0.625 0.4545455
#> ATM 0.4545455 1 0.625 0.4545455
#> BRAF 0.4545455 1 0.625 0.4545455
#> CDKN2A 0.4545455 1 0.625 0.4545455
#> CMTR2 0.4545455 1 0.625 0.4545455
#> CTNNB1 0.4545455 1 0.625 0.4545455
#> EGFR 0.4545455 1 0.625 0.4545455
#> KEAP1 0.4545455 1 0.625 0.4545455
#> KRAS 0.4545455 1 0.625 0.4545455
#> MGA 0.4545455 1 0.625 0.4545455
#> NF1 0.4545455 1 0.625 0.4545455
#> PIK3CA 0.4545455 1 0.625 0.4545455
#> PTPRD 0.4545455 1 0.625 0.4545455
#> PTPRT 0.4545455 1 0.625 0.4545455
#> RB1 0.4545455 1 0.625 0.4545455
#> RBM10 0.4545455 1 0.625 0.4545455
#> SETBP1 0.4545455 1 0.625 0.4545455
#> SETD2 0.4545455 1 0.625 0.4545455
#> SMAD4 0.4545455 1 0.625 0.4545455
#> SMARCA4 0.4545455 1 0.625 0.4545455
#> STK11 0.4545455 1 0.625 0.4545455
#> TP53 0.4545455 1 0.625 0.4545455
#> U2AF1 0.4545455 1 0.625 0.4545455
#> TCGA-44-6148-01 TCGA-44-6778-01 TCGA-44-6779-01 TCGA-44-7660-01
#> ARID1A 1 0.7692308 1 0.7692308
#> ATM 1 0.7692308 1 0.7692308
#> BRAF 1 0.7692308 1 0.7692308
#> CDKN2A 1 0.7692308 1 0.7692308
#> CMTR2 1 0.7692308 1 0.7692308
#> CTNNB1 1 0.7692308 1 0.7692308
#> EGFR 1 0.7692308 1 0.7692308
#> KEAP1 1 0.7692308 1 0.7692308
#> KRAS 1 0.7692308 1 0.7692308
#> MGA 1 0.7692308 1 0.7692308
#> NF1 1 0.7692308 1 0.7692308
#> PIK3CA 1 0.7692308 1 0.7692308
#> PTPRD 1 0.7692308 1 0.7692308
#> PTPRT 1 0.7692308 1 0.7692308
#> RB1 1 0.7692308 1 0.7692308
#> RBM10 1 0.7692308 1 0.7692308
#> SETBP1 1 0.7692308 1 0.7692308
#> SETD2 1 0.7692308 1 0.7692308
#> SMAD4 1 0.7692308 1 0.7692308
#> SMARCA4 1 0.7692308 1 0.7692308
#> STK11 1 0.7692308 1 0.7692308
#> TP53 1 0.7692308 1 0.7692308
#> U2AF1 1 0.7692308 1 0.7692308
#> TCGA-44-7667-01 TCGA-44-7669-01 TCGA-44-A479-01 TCGA-44-A47B-01
#> ARID1A 0.625 0.625 0.7692308 1
#> ATM 0.625 0.625 0.7692308 1
#> BRAF 0.625 0.625 0.7692308 1
#> CDKN2A 0.625 0.625 0.7692308 1
#> CMTR2 0.625 0.625 0.7692308 1
#> CTNNB1 0.625 0.625 0.7692308 1
#> EGFR 0.625 0.625 0.7692308 1
#> KEAP1 0.625 0.625 0.7692308 1
#> KRAS 0.625 0.625 0.7692308 1
#> MGA 0.625 0.625 0.7692308 1
#> NF1 0.625 0.625 0.7692308 1
#> PIK3CA 0.625 0.625 0.7692308 1
#> PTPRD 0.625 0.625 0.7692308 1
#> PTPRT 0.625 0.625 0.7692308 1
#> RB1 0.625 0.625 0.7692308 1
#> RBM10 0.625 0.625 0.7692308 1
#> SETBP1 0.625 0.625 0.7692308 1
#> SETD2 0.625 0.625 0.7692308 1
#> SMAD4 0.625 0.625 0.7692308 1
#> SMARCA4 0.625 0.625 0.7692308 1
#> STK11 0.625 0.625 0.7692308 1
#> TP53 0.625 0.625 0.7692308 1
#> U2AF1 0.625 0.625 0.7692308 1
#> TCGA-49-4487-01 TCGA-49-4501-01 TCGA-49-4512-01 TCGA-49-6742-01
#> ARID1A 0.7692308 1 1 0.7692308
#> ATM 0.7692308 1 1 0.7692308
#> BRAF 0.7692308 1 1 0.7692308
#> CDKN2A 0.7692308 1 1 0.7692308
#> CMTR2 0.7692308 1 1 0.7692308
#> CTNNB1 0.7692308 1 1 0.7692308
#> EGFR 0.7692308 1 1 0.7692308
#> KEAP1 0.7692308 1 1 0.7692308
#> KRAS 0.7692308 1 1 0.7692308
#> MGA 0.7692308 1 1 0.7692308
#> NF1 0.7692308 1 1 0.7692308
#> PIK3CA 0.7692308 1 1 0.7692308
#> PTPRD 0.7692308 1 1 0.7692308
#> PTPRT 0.7692308 1 1 0.7692308
#> RB1 0.7692308 1 1 0.7692308
#> RBM10 0.7692308 1 1 0.7692308
#> SETBP1 0.7692308 1 1 0.7692308
#> SETD2 0.7692308 1 1 0.7692308
#> SMAD4 0.7692308 1 1 0.7692308
#> SMARCA4 0.7692308 1 1 0.7692308
#> STK11 0.7692308 1 1 0.7692308
#> TP53 0.7692308 1 1 0.7692308
#> U2AF1 0.7692308 1 1 0.7692308
#> TCGA-49-6743-01 TCGA-49-6761-01 TCGA-49-6767-01 TCGA-49-AAR0-01
#> ARID1A 0.5263158 0.7692308 0.625 1
#> ATM 0.5263158 0.7692308 0.625 1
#> BRAF 0.5263158 0.7692308 0.625 1
#> CDKN2A 0.5263158 0.7692308 0.625 1
#> CMTR2 0.5263158 0.7692308 0.625 1
#> CTNNB1 0.5263158 0.7692308 0.625 1
#> EGFR 0.5263158 0.7692308 0.625 1
#> KEAP1 0.5263158 0.7692308 0.625 1
#> KRAS 0.5263158 0.7692308 0.625 1
#> MGA 0.5263158 0.7692308 0.625 1
#> NF1 0.5263158 0.7692308 0.625 1
#> PIK3CA 0.5263158 0.7692308 0.625 1
#> PTPRD 0.5263158 0.7692308 0.625 1
#> PTPRT 0.5263158 0.7692308 0.625 1
#> RB1 0.5263158 0.7692308 0.625 1
#> RBM10 0.5263158 0.7692308 0.625 1
#> SETBP1 0.5263158 0.7692308 0.625 1
#> SETD2 0.5263158 0.7692308 0.625 1
#> SMAD4 0.5263158 0.7692308 0.625 1
#> SMARCA4 0.5263158 0.7692308 0.625 1
#> STK11 0.5263158 0.7692308 0.625 1
#> TP53 0.5263158 0.7692308 0.625 1
#> U2AF1 0.5263158 0.7692308 0.625 1
#> TCGA-49-AAR2-01 TCGA-49-AAR3-01 TCGA-49-AAR4-01 TCGA-49-AARR-01
#> ARID1A 0.7692308 1 0.625 1
#> ATM 0.7692308 1 0.625 1
#> BRAF 0.7692308 1 0.625 1
#> CDKN2A 0.7692308 1 0.625 1
#> CMTR2 0.7692308 1 0.625 1
#> CTNNB1 0.7692308 1 0.625 1
#> EGFR 0.7692308 1 0.625 1
#> KEAP1 0.7692308 1 0.625 1
#> KRAS 0.7692308 1 0.625 1
#> MGA 0.7692308 1 0.625 1
#> NF1 0.7692308 1 0.625 1
#> PIK3CA 0.7692308 1 0.625 1
#> PTPRD 0.7692308 1 0.625 1
#> PTPRT 0.7692308 1 0.625 1
#> RB1 0.7692308 1 0.625 1
#> RBM10 0.7692308 1 0.625 1
#> SETBP1 0.7692308 1 0.625 1
#> SETD2 0.7692308 1 0.625 1
#> SMAD4 0.7692308 1 0.625 1
#> SMARCA4 0.7692308 1 0.625 1
#> STK11 0.7692308 1 0.625 1
#> TP53 0.7692308 1 0.625 1
#> U2AF1 0.7692308 1 0.625 1
#> TCGA-50-5045-01 TCGA-50-5049-01 TCGA-50-5055-01 TCGA-50-5072-01
#> ARID1A 0.7692308 0.5263158 1 1
#> ATM 0.7692308 0.5263158 1 1
#> BRAF 0.7692308 0.5263158 1 1
#> CDKN2A 0.7692308 0.5263158 1 1
#> CMTR2 0.7692308 0.5263158 1 1
#> CTNNB1 0.7692308 0.5263158 1 1
#> EGFR 0.7692308 0.5263158 1 1
#> KEAP1 0.7692308 0.5263158 1 1
#> KRAS 0.7692308 0.5263158 1 1
#> MGA 0.7692308 0.5263158 1 1
#> NF1 0.7692308 0.5263158 1 1
#> PIK3CA 0.7692308 0.5263158 1 1
#> PTPRD 0.7692308 0.5263158 1 1
#> PTPRT 0.7692308 0.5263158 1 1
#> RB1 0.7692308 0.5263158 1 1
#> RBM10 0.7692308 0.5263158 1 1
#> SETBP1 0.7692308 0.5263158 1 1
#> SETD2 0.7692308 0.5263158 1 1
#> SMAD4 0.7692308 0.5263158 1 1
#> SMARCA4 0.7692308 0.5263158 1 1
#> STK11 0.7692308 0.5263158 1 1
#> TP53 0.7692308 0.5263158 1 1
#> U2AF1 0.7692308 0.5263158 1 1
#> TCGA-50-5931-01 TCGA-50-5935-01 TCGA-50-6590-01 TCGA-50-6597-01
#> ARID1A 0.7692308 1 0.4545455 1
#> ATM 0.7692308 1 0.4545455 1
#> BRAF 0.7692308 1 0.4545455 1
#> CDKN2A 0.7692308 1 0.4545455 1
#> CMTR2 0.7692308 1 0.4545455 1
#> CTNNB1 0.7692308 1 0.4545455 1
#> EGFR 0.7692308 1 0.4545455 1
#> KEAP1 0.7692308 1 0.4545455 1
#> KRAS 0.7692308 1 0.4545455 1
#> MGA 0.7692308 1 0.4545455 1
#> NF1 0.7692308 1 0.4545455 1
#> PIK3CA 0.7692308 1 0.4545455 1
#> PTPRD 0.7692308 1 0.4545455 1
#> PTPRT 0.7692308 1 0.4545455 1
#> RB1 0.7692308 1 0.4545455 1
#> RBM10 0.7692308 1 0.4545455 1
#> SETBP1 0.7692308 1 0.4545455 1
#> SETD2 0.7692308 1 0.4545455 1
#> SMAD4 0.7692308 1 0.4545455 1
#> SMARCA4 0.7692308 1 0.4545455 1
#> STK11 0.7692308 1 0.4545455 1
#> TP53 0.7692308 1 0.4545455 1
#> U2AF1 0.7692308 1 0.4545455 1
#> TCGA-50-8457-01 TCGA-53-7624-01 TCGA-55-1594-01 TCGA-55-5899-01
#> ARID1A 1 0.5263158 1 0.625
#> ATM 1 0.5263158 1 0.625
#> BRAF 1 0.5263158 1 0.625
#> CDKN2A 1 0.5263158 1 0.625
#> CMTR2 1 0.5263158 1 0.625
#> CTNNB1 1 0.5263158 1 0.625
#> EGFR 1 0.5263158 1 0.625
#> KEAP1 1 0.5263158 1 0.625
#> KRAS 1 0.5263158 1 0.625
#> MGA 1 0.5263158 1 0.625
#> NF1 1 0.5263158 1 0.625
#> PIK3CA 1 0.5263158 1 0.625
#> PTPRD 1 0.5263158 1 0.625
#> PTPRT 1 0.5263158 1 0.625
#> RB1 1 0.5263158 1 0.625
#> RBM10 1 0.5263158 1 0.625
#> SETBP1 1 0.5263158 1 0.625
#> SETD2 1 0.5263158 1 0.625
#> SMAD4 1 0.5263158 1 0.625
#> SMARCA4 1 0.5263158 1 0.625
#> STK11 1 0.5263158 1 0.625
#> TP53 1 0.5263158 1 0.625
#> U2AF1 1 0.5263158 1 0.625
#> TCGA-55-6543-01 TCGA-55-6712-01 TCGA-55-6971-01 TCGA-55-6972-01
#> ARID1A 1 1 0.7692308 0.7692308
#> ATM 1 1 0.7692308 0.7692308
#> BRAF 1 1 0.7692308 0.7692308
#> CDKN2A 1 1 0.7692308 0.7692308
#> CMTR2 1 1 0.7692308 0.7692308
#> CTNNB1 1 1 0.7692308 0.7692308
#> EGFR 1 1 0.7692308 0.7692308
#> KEAP1 1 1 0.7692308 0.7692308
#> KRAS 1 1 0.7692308 0.7692308
#> MGA 1 1 0.7692308 0.7692308
#> NF1 1 1 0.7692308 0.7692308
#> PIK3CA 1 1 0.7692308 0.7692308
#> PTPRD 1 1 0.7692308 0.7692308
#> PTPRT 1 1 0.7692308 0.7692308
#> RB1 1 1 0.7692308 0.7692308
#> RBM10 1 1 0.7692308 0.7692308
#> SETBP1 1 1 0.7692308 0.7692308
#> SETD2 1 1 0.7692308 0.7692308
#> SMAD4 1 1 0.7692308 0.7692308
#> SMARCA4 1 1 0.7692308 0.7692308
#> STK11 1 1 0.7692308 0.7692308
#> TP53 1 1 0.7692308 0.7692308
#> U2AF1 1 1 0.7692308 0.7692308
#> TCGA-55-6978-01 TCGA-55-6980-01 TCGA-55-6982-01 TCGA-55-6985-01
#> ARID1A 1 1 0.7692308 0.625
#> ATM 1 1 0.7692308 0.625
#> BRAF 1 1 0.7692308 0.625
#> CDKN2A 1 1 0.7692308 0.625
#> CMTR2 1 1 0.7692308 0.625
#> CTNNB1 1 1 0.7692308 0.625
#> EGFR 1 1 0.7692308 0.625
#> KEAP1 1 1 0.7692308 0.625
#> KRAS 1 1 0.7692308 0.625
#> MGA 1 1 0.7692308 0.625
#> NF1 1 1 0.7692308 0.625
#> PIK3CA 1 1 0.7692308 0.625
#> PTPRD 1 1 0.7692308 0.625
#> PTPRT 1 1 0.7692308 0.625
#> RB1 1 1 0.7692308 0.625
#> RBM10 1 1 0.7692308 0.625
#> SETBP1 1 1 0.7692308 0.625
#> SETD2 1 1 0.7692308 0.625
#> SMAD4 1 1 0.7692308 0.625
#> SMARCA4 1 1 0.7692308 0.625
#> STK11 1 1 0.7692308 0.625
#> TP53 1 1 0.7692308 0.625
#> U2AF1 1 1 0.7692308 0.625
#> TCGA-55-6986-01 TCGA-55-6987-01 TCGA-55-7574-01 TCGA-55-8087-01
#> ARID1A 1 0.7692308 0.7692308 1
#> ATM 1 0.7692308 0.7692308 1
#> BRAF 1 0.7692308 0.7692308 1
#> CDKN2A 1 0.7692308 0.7692308 1
#> CMTR2 1 0.7692308 0.7692308 1
#> CTNNB1 1 0.7692308 0.7692308 1
#> EGFR 1 0.7692308 0.7692308 1
#> KEAP1 1 0.7692308 0.7692308 1
#> KRAS 1 0.7692308 0.7692308 1
#> MGA 1 0.7692308 0.7692308 1
#> NF1 1 0.7692308 0.7692308 1
#> PIK3CA 1 0.7692308 0.7692308 1
#> PTPRD 1 0.7692308 0.7692308 1
#> PTPRT 1 0.7692308 0.7692308 1
#> RB1 1 0.7692308 0.7692308 1
#> RBM10 1 0.7692308 0.7692308 1
#> SETBP1 1 0.7692308 0.7692308 1
#> SETD2 1 0.7692308 0.7692308 1
#> SMAD4 1 0.7692308 0.7692308 1
#> SMARCA4 1 0.7692308 0.7692308 1
#> STK11 1 0.7692308 0.7692308 1
#> TP53 1 0.7692308 0.7692308 1
#> U2AF1 1 0.7692308 0.7692308 1
#> TCGA-55-8091-01 TCGA-55-8204-01 TCGA-55-8206-01 TCGA-55-8507-01
#> ARID1A 1 1 1 0.4545455
#> ATM 1 1 1 0.4545455
#> BRAF 1 1 1 0.4545455
#> CDKN2A 1 1 1 0.4545455
#> CMTR2 1 1 1 0.4545455
#> CTNNB1 1 1 1 0.4545455
#> EGFR 1 1 1 0.4545455
#> KEAP1 1 1 1 0.4545455
#> KRAS 1 1 1 0.4545455
#> MGA 1 1 1 0.4545455
#> NF1 1 1 1 0.4545455
#> PIK3CA 1 1 1 0.4545455
#> PTPRD 1 1 1 0.4545455
#> PTPRT 1 1 1 0.4545455
#> RB1 1 1 1 0.4545455
#> RBM10 1 1 1 0.4545455
#> SETBP1 1 1 1 0.4545455
#> SETD2 1 1 1 0.4545455
#> SMAD4 1 1 1 0.4545455
#> SMARCA4 1 1 1 0.4545455
#> STK11 1 1 1 0.4545455
#> TP53 1 1 1 0.4545455
#> U2AF1 1 1 1 0.4545455
#> TCGA-55-8510-01 TCGA-55-8513-01 TCGA-55-8619-01 TCGA-55-8621-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-55-A4DF-01 TCGA-62-8397-01 TCGA-62-A46O-01 TCGA-62-A46P-01
#> ARID1A 0.5263158 1 0.4545455 0.7692308
#> ATM 0.5263158 1 0.4545455 0.7692308
#> BRAF 0.5263158 1 0.4545455 0.7692308
#> CDKN2A 0.5263158 1 0.4545455 0.7692308
#> CMTR2 0.5263158 1 0.4545455 0.7692308
#> CTNNB1 0.5263158 1 0.4545455 0.7692308
#> EGFR 0.5263158 1 0.4545455 0.7692308
#> KEAP1 0.5263158 1 0.4545455 0.7692308
#> KRAS 0.5263158 1 0.4545455 0.7692308
#> MGA 0.5263158 1 0.4545455 0.7692308
#> NF1 0.5263158 1 0.4545455 0.7692308
#> PIK3CA 0.5263158 1 0.4545455 0.7692308
#> PTPRD 0.5263158 1 0.4545455 0.7692308
#> PTPRT 0.5263158 1 0.4545455 0.7692308
#> RB1 0.5263158 1 0.4545455 0.7692308
#> RBM10 0.5263158 1 0.4545455 0.7692308
#> SETBP1 0.5263158 1 0.4545455 0.7692308
#> SETD2 0.5263158 1 0.4545455 0.7692308
#> SMAD4 0.5263158 1 0.4545455 0.7692308
#> SMARCA4 0.5263158 1 0.4545455 0.7692308
#> STK11 0.5263158 1 0.4545455 0.7692308
#> TP53 0.5263158 1 0.4545455 0.7692308
#> U2AF1 0.5263158 1 0.4545455 0.7692308
#> TCGA-62-A46Y-01 TCGA-64-5779-01 TCGA-64-5781-01 TCGA-69-7760-01
#> ARID1A 1 0.7692308 0.4 1
#> ATM 1 0.7692308 0.4 1
#> BRAF 1 0.7692308 0.4 1
#> CDKN2A 1 0.7692308 0.4 1
#> CMTR2 1 0.7692308 0.4 1
#> CTNNB1 1 0.7692308 0.4 1
#> EGFR 1 0.7692308 0.4 1
#> KEAP1 1 0.7692308 0.4 1
#> KRAS 1 0.7692308 0.4 1
#> MGA 1 0.7692308 0.4 1
#> NF1 1 0.7692308 0.4 1
#> PIK3CA 1 0.7692308 0.4 1
#> PTPRD 1 0.7692308 0.4 1
#> PTPRT 1 0.7692308 0.4 1
#> RB1 1 0.7692308 0.4 1
#> RBM10 1 0.7692308 0.4 1
#> SETBP1 1 0.7692308 0.4 1
#> SETD2 1 0.7692308 0.4 1
#> SMAD4 1 0.7692308 0.4 1
#> SMARCA4 1 0.7692308 0.4 1
#> STK11 1 0.7692308 0.4 1
#> TP53 1 0.7692308 0.4 1
#> U2AF1 1 0.7692308 0.4 1
#> TCGA-69-7761-01 TCGA-69-7763-01 TCGA-69-7764-01 TCGA-69-7979-01
#> ARID1A 1 1 1 0.3571429
#> ATM 1 1 1 0.3571429
#> BRAF 1 1 1 0.3571429
#> CDKN2A 1 1 1 0.3571429
#> CMTR2 1 1 1 0.3571429
#> CTNNB1 1 1 1 0.3571429
#> EGFR 1 1 1 0.3571429
#> KEAP1 1 1 1 0.3571429
#> KRAS 1 1 1 0.3571429
#> MGA 1 1 1 0.3571429
#> NF1 1 1 1 0.3571429
#> PIK3CA 1 1 1 0.3571429
#> PTPRD 1 1 1 0.3571429
#> PTPRT 1 1 1 0.3571429
#> RB1 1 1 1 0.3571429
#> RBM10 1 1 1 0.3571429
#> SETBP1 1 1 1 0.3571429
#> SETD2 1 1 1 0.3571429
#> SMAD4 1 1 1 0.3571429
#> SMARCA4 1 1 1 0.3571429
#> STK11 1 1 1 0.3571429
#> TP53 1 1 1 0.3571429
#> U2AF1 1 1 1 0.3571429
#> TCGA-69-8255-01 TCGA-69-A59K-01 TCGA-71-6725-01 TCGA-73-4659-01
#> ARID1A 0.7692308 0.625 1 1
#> ATM 0.7692308 0.625 1 1
#> BRAF 0.7692308 0.625 1 1
#> CDKN2A 0.7692308 0.625 1 1
#> CMTR2 0.7692308 0.625 1 1
#> CTNNB1 0.7692308 0.625 1 1
#> EGFR 0.7692308 0.625 1 1
#> KEAP1 0.7692308 0.625 1 1
#> KRAS 0.7692308 0.625 1 1
#> MGA 0.7692308 0.625 1 1
#> NF1 0.7692308 0.625 1 1
#> PIK3CA 0.7692308 0.625 1 1
#> PTPRD 0.7692308 0.625 1 1
#> PTPRT 0.7692308 0.625 1 1
#> RB1 0.7692308 0.625 1 1
#> RBM10 0.7692308 0.625 1 1
#> SETBP1 0.7692308 0.625 1 1
#> SETD2 0.7692308 0.625 1 1
#> SMAD4 0.7692308 0.625 1 1
#> SMARCA4 0.7692308 0.625 1 1
#> STK11 0.7692308 0.625 1 1
#> TP53 0.7692308 0.625 1 1
#> U2AF1 0.7692308 0.625 1 1
#> TCGA-73-4668-01 TCGA-73-4675-01 TCGA-75-5122-01 TCGA-75-5125-01
#> ARID1A 0.625 1 1 1
#> ATM 0.625 1 1 1
#> BRAF 0.625 1 1 1
#> CDKN2A 0.625 1 1 1
#> CMTR2 0.625 1 1 1
#> CTNNB1 0.625 1 1 1
#> EGFR 0.625 1 1 1
#> KEAP1 0.625 1 1 1
#> KRAS 0.625 1 1 1
#> MGA 0.625 1 1 1
#> NF1 0.625 1 1 1
#> PIK3CA 0.625 1 1 1
#> PTPRD 0.625 1 1 1
#> PTPRT 0.625 1 1 1
#> RB1 0.625 1 1 1
#> RBM10 0.625 1 1 1
#> SETBP1 0.625 1 1 1
#> SETD2 0.625 1 1 1
#> SMAD4 0.625 1 1 1
#> SMARCA4 0.625 1 1 1
#> STK11 0.625 1 1 1
#> TP53 0.625 1 1 1
#> U2AF1 0.625 1 1 1
#> TCGA-75-6203-01 TCGA-75-6205-01 TCGA-75-6207-01 TCGA-75-6212-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-75-7025-01 TCGA-75-7031-01 TCGA-78-7154-01 TCGA-78-7156-01
#> ARID1A 1 1 0.7692308 0.7692308
#> ATM 1 1 0.7692308 0.7692308
#> BRAF 1 1 0.7692308 0.7692308
#> CDKN2A 1 1 0.7692308 0.7692308
#> CMTR2 1 1 0.7692308 0.7692308
#> CTNNB1 1 1 0.7692308 0.7692308
#> EGFR 1 1 0.7692308 0.7692308
#> KEAP1 1 1 0.7692308 0.7692308
#> KRAS 1 1 0.7692308 0.7692308
#> MGA 1 1 0.7692308 0.7692308
#> NF1 1 1 0.7692308 0.7692308
#> PIK3CA 1 1 0.7692308 0.7692308
#> PTPRD 1 1 0.7692308 0.7692308
#> PTPRT 1 1 0.7692308 0.7692308
#> RB1 1 1 0.7692308 0.7692308
#> RBM10 1 1 0.7692308 0.7692308
#> SETBP1 1 1 0.7692308 0.7692308
#> SETD2 1 1 0.7692308 0.7692308
#> SMAD4 1 1 0.7692308 0.7692308
#> SMARCA4 1 1 0.7692308 0.7692308
#> STK11 1 1 0.7692308 0.7692308
#> TP53 1 1 0.7692308 0.7692308
#> U2AF1 1 1 0.7692308 0.7692308
#> TCGA-78-7162-01 TCGA-78-7163-01 TCGA-78-7535-01 TCGA-78-7536-01
#> ARID1A 1 1 1 0.5263158
#> ATM 1 1 1 0.5263158
#> BRAF 1 1 1 0.5263158
#> CDKN2A 1 1 1 0.5263158
#> CMTR2 1 1 1 0.5263158
#> CTNNB1 1 1 1 0.5263158
#> EGFR 1 1 1 0.5263158
#> KEAP1 1 1 1 0.5263158
#> KRAS 1 1 1 0.5263158
#> MGA 1 1 1 0.5263158
#> NF1 1 1 1 0.5263158
#> PIK3CA 1 1 1 0.5263158
#> PTPRD 1 1 1 0.5263158
#> PTPRT 1 1 1 0.5263158
#> RB1 1 1 1 0.5263158
#> RBM10 1 1 1 0.5263158
#> SETBP1 1 1 1 0.5263158
#> SETD2 1 1 1 0.5263158
#> SMAD4 1 1 1 0.5263158
#> SMARCA4 1 1 1 0.5263158
#> STK11 1 1 1 0.5263158
#> TP53 1 1 1 0.5263158
#> U2AF1 1 1 1 0.5263158
#> TCGA-78-7542-01 TCGA-78-8648-01 TCGA-80-5611-01 TCGA-86-6562-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-86-7701-01 TCGA-86-7955-01 TCGA-86-8073-01 TCGA-86-8358-01
#> ARID1A 0.7692308 0.7692308 0.3571429 0.4545455
#> ATM 0.7692308 0.7692308 0.3571429 0.4545455
#> BRAF 0.7692308 0.7692308 0.3571429 0.4545455
#> CDKN2A 0.7692308 0.7692308 0.3571429 0.4545455
#> CMTR2 0.7692308 0.7692308 0.3571429 0.4545455
#> CTNNB1 0.7692308 0.7692308 0.3571429 0.4545455
#> EGFR 0.7692308 0.7692308 0.3571429 0.4545455
#> KEAP1 0.7692308 0.7692308 0.3571429 0.4545455
#> KRAS 0.7692308 0.7692308 0.3571429 0.4545455
#> MGA 0.7692308 0.7692308 0.3571429 0.4545455
#> NF1 0.7692308 0.7692308 0.3571429 0.4545455
#> PIK3CA 0.7692308 0.7692308 0.3571429 0.4545455
#> PTPRD 0.7692308 0.7692308 0.3571429 0.4545455
#> PTPRT 0.7692308 0.7692308 0.3571429 0.4545455
#> RB1 0.7692308 0.7692308 0.3571429 0.4545455
#> RBM10 0.7692308 0.7692308 0.3571429 0.4545455
#> SETBP1 0.7692308 0.7692308 0.3571429 0.4545455
#> SETD2 0.7692308 0.7692308 0.3571429 0.4545455
#> SMAD4 0.7692308 0.7692308 0.3571429 0.4545455
#> SMARCA4 0.7692308 0.7692308 0.3571429 0.4545455
#> STK11 0.7692308 0.7692308 0.3571429 0.4545455
#> TP53 0.7692308 0.7692308 0.3571429 0.4545455
#> U2AF1 0.7692308 0.7692308 0.3571429 0.4545455
#> TCGA-86-8669-01 TCGA-86-8671-01 TCGA-86-8672-01 TCGA-86-A4P8-01
#> ARID1A 1 1 0.7692308 1
#> ATM 1 1 0.7692308 1
#> BRAF 1 1 0.7692308 1
#> CDKN2A 1 1 0.7692308 1
#> CMTR2 1 1 0.7692308 1
#> CTNNB1 1 1 0.7692308 1
#> EGFR 1 1 0.7692308 1
#> KEAP1 1 1 0.7692308 1
#> KRAS 1 1 0.7692308 1
#> MGA 1 1 0.7692308 1
#> NF1 1 1 0.7692308 1
#> PIK3CA 1 1 0.7692308 1
#> PTPRD 1 1 0.7692308 1
#> PTPRT 1 1 0.7692308 1
#> RB1 1 1 0.7692308 1
#> RBM10 1 1 0.7692308 1
#> SETBP1 1 1 0.7692308 1
#> SETD2 1 1 0.7692308 1
#> SMAD4 1 1 0.7692308 1
#> SMARCA4 1 1 0.7692308 1
#> STK11 1 1 0.7692308 1
#> TP53 1 1 0.7692308 1
#> U2AF1 1 1 0.7692308 1
#> TCGA-91-6831-01 TCGA-91-7771-01 TCGA-91-8496-01 TCGA-91-8497-01
#> ARID1A 0.7692308 1 1 1
#> ATM 0.7692308 1 1 1
#> BRAF 0.7692308 1 1 1
#> CDKN2A 0.7692308 1 1 1
#> CMTR2 0.7692308 1 1 1
#> CTNNB1 0.7692308 1 1 1
#> EGFR 0.7692308 1 1 1
#> KEAP1 0.7692308 1 1 1
#> KRAS 0.7692308 1 1 1
#> MGA 0.7692308 1 1 1
#> NF1 0.7692308 1 1 1
#> PIK3CA 0.7692308 1 1 1
#> PTPRD 0.7692308 1 1 1
#> PTPRT 0.7692308 1 1 1
#> RB1 0.7692308 1 1 1
#> RBM10 0.7692308 1 1 1
#> SETBP1 0.7692308 1 1 1
#> SETD2 0.7692308 1 1 1
#> SMAD4 0.7692308 1 1 1
#> SMARCA4 0.7692308 1 1 1
#> STK11 0.7692308 1 1 1
#> TP53 0.7692308 1 1 1
#> U2AF1 0.7692308 1 1 1
#> TCGA-91-8499-01 TCGA-91-A4BC-01 TCGA-93-A4JQ-01 TCGA-95-8039-01
#> ARID1A 0.7692308 0.625 1 1
#> ATM 0.7692308 0.625 1 1
#> BRAF 0.7692308 0.625 1 1
#> CDKN2A 0.7692308 0.625 1 1
#> CMTR2 0.7692308 0.625 1 1
#> CTNNB1 0.7692308 0.625 1 1
#> EGFR 0.7692308 0.625 1 1
#> KEAP1 0.7692308 0.625 1 1
#> KRAS 0.7692308 0.625 1 1
#> MGA 0.7692308 0.625 1 1
#> NF1 0.7692308 0.625 1 1
#> PIK3CA 0.7692308 0.625 1 1
#> PTPRD 0.7692308 0.625 1 1
#> PTPRT 0.7692308 0.625 1 1
#> RB1 0.7692308 0.625 1 1
#> RBM10 0.7692308 0.625 1 1
#> SETBP1 0.7692308 0.625 1 1
#> SETD2 0.7692308 0.625 1 1
#> SMAD4 0.7692308 0.625 1 1
#> SMARCA4 0.7692308 0.625 1 1
#> STK11 0.7692308 0.625 1 1
#> TP53 0.7692308 0.625 1 1
#> U2AF1 0.7692308 0.625 1 1
#> TCGA-95-8494-01 TCGA-97-7547-01 TCGA-97-7552-01 TCGA-97-8172-01
#> ARID1A 1 1 1 0.7692308
#> ATM 1 1 1 0.7692308
#> BRAF 1 1 1 0.7692308
#> CDKN2A 1 1 1 0.7692308
#> CMTR2 1 1 1 0.7692308
#> CTNNB1 1 1 1 0.7692308
#> EGFR 1 1 1 0.7692308
#> KEAP1 1 1 1 0.7692308
#> KRAS 1 1 1 0.7692308
#> MGA 1 1 1 0.7692308
#> NF1 1 1 1 0.7692308
#> PIK3CA 1 1 1 0.7692308
#> PTPRD 1 1 1 0.7692308
#> PTPRT 1 1 1 0.7692308
#> RB1 1 1 1 0.7692308
#> RBM10 1 1 1 0.7692308
#> SETBP1 1 1 1 0.7692308
#> SETD2 1 1 1 0.7692308
#> SMAD4 1 1 1 0.7692308
#> SMARCA4 1 1 1 0.7692308
#> STK11 1 1 1 0.7692308
#> TP53 1 1 1 0.7692308
#> U2AF1 1 1 1 0.7692308
#> TCGA-97-8552-01 TCGA-97-A4M2-01 TCGA-97-A4M6-01 TCGA-99-7458-01
#> ARID1A 1 1 1 0.625
#> ATM 1 1 1 0.625
#> BRAF 1 1 1 0.625
#> CDKN2A 1 1 1 0.625
#> CMTR2 1 1 1 0.625
#> CTNNB1 1 1 1 0.625
#> EGFR 1 1 1 0.625
#> KEAP1 1 1 1 0.625
#> KRAS 1 1 1 0.625
#> MGA 1 1 1 0.625
#> NF1 1 1 1 0.625
#> PIK3CA 1 1 1 0.625
#> PTPRD 1 1 1 0.625
#> PTPRT 1 1 1 0.625
#> RB1 1 1 1 0.625
#> RBM10 1 1 1 0.625
#> SETBP1 1 1 1 0.625
#> SETD2 1 1 1 0.625
#> SMAD4 1 1 1 0.625
#> SMARCA4 1 1 1 0.625
#> STK11 1 1 1 0.625
#> TP53 1 1 1 0.625
#> U2AF1 1 1 1 0.625
#> TCGA-99-AA5R-01 TCGA-J2-8192-01 TCGA-J2-A4AE-01 TCGA-L4-A4E6-01
#> ARID1A 1 1 1 1
#> ATM 1 1 1 1
#> BRAF 1 1 1 1
#> CDKN2A 1 1 1 1
#> CMTR2 1 1 1 1
#> CTNNB1 1 1 1 1
#> EGFR 1 1 1 1
#> KEAP1 1 1 1 1
#> KRAS 1 1 1 1
#> MGA 1 1 1 1
#> NF1 1 1 1 1
#> PIK3CA 1 1 1 1
#> PTPRD 1 1 1 1
#> PTPRT 1 1 1 1
#> RB1 1 1 1 1
#> RBM10 1 1 1 1
#> SETBP1 1 1 1 1
#> SETD2 1 1 1 1
#> SMAD4 1 1 1 1
#> SMARCA4 1 1 1 1
#> STK11 1 1 1 1
#> TP53 1 1 1 1
#> U2AF1 1 1 1 1
#> TCGA-MP-A4T6-01 TCGA-MP-A4TC-01 TCGA-MP-A4TH-01 TCGA-MP-A4TJ-01
#> ARID1A 1 0.7692308 1 1
#> ATM 1 0.7692308 1 1
#> BRAF 1 0.7692308 1 1
#> CDKN2A 1 0.7692308 1 1
#> CMTR2 1 0.7692308 1 1
#> CTNNB1 1 0.7692308 1 1
#> EGFR 1 0.7692308 1 1
#> KEAP1 1 0.7692308 1 1
#> KRAS 1 0.7692308 1 1
#> MGA 1 0.7692308 1 1
#> NF1 1 0.7692308 1 1
#> PIK3CA 1 0.7692308 1 1
#> PTPRD 1 0.7692308 1 1
#> PTPRT 1 0.7692308 1 1
#> RB1 1 0.7692308 1 1
#> RBM10 1 0.7692308 1 1
#> SETBP1 1 0.7692308 1 1
#> SETD2 1 0.7692308 1 1
#> SMAD4 1 0.7692308 1 1
#> SMARCA4 1 0.7692308 1 1
#> STK11 1 0.7692308 1 1
#> TP53 1 0.7692308 1 1
#> U2AF1 1 0.7692308 1 1
#> TCGA-MP-A5C7-01 TCGA-NJ-A4YF-01 TCGA-NJ-A55A-01 TCGA-NJ-A7XG-01
#> ARID1A 1 0.625 1 1
#> ATM 1 0.625 1 1
#> BRAF 1 0.625 1 1
#> CDKN2A 1 0.625 1 1
#> CMTR2 1 0.625 1 1
#> CTNNB1 1 0.625 1 1
#> EGFR 1 0.625 1 1
#> KEAP1 1 0.625 1 1
#> KRAS 1 0.625 1 1
#> MGA 1 0.625 1 1
#> NF1 1 0.625 1 1
#> PIK3CA 1 0.625 1 1
#> PTPRD 1 0.625 1 1
#> PTPRT 1 0.625 1 1
#> RB1 1 0.625 1 1
#> RBM10 1 0.625 1 1
#> SETBP1 1 0.625 1 1
#> SETD2 1 0.625 1 1
#> SMAD4 1 0.625 1 1
#> SMARCA4 1 0.625 1 1
#> STK11 1 0.625 1 1
#> TP53 1 0.625 1 1
#> U2AF1 1 0.625 1 1
#> TCGA-O1-A52J-01 TCGA-S2-AA1A-01
#> ARID1A 1 1
#> ATM 1 1
#> BRAF 1 1
#> CDKN2A 1 1
#> CMTR2 1 1
#> CTNNB1 1 1
#> EGFR 1 1
#> KEAP1 1 1
#> KRAS 1 1
#> MGA 1 1
#> NF1 1 1
#> PIK3CA 1 1
#> PTPRD 1 1
#> PTPRT 1 1
#> RB1 1 1
#> RBM10 1 1
#> SETBP1 1 1
#> SETD2 1 1
#> SMAD4 1 1
#> SMARCA4 1 1
#> STK11 1 1
#> TP53 1 1
#> U2AF1 1 1
#>
#> $W_median
#> $W_median$LUAD
#> [1] 192
#>
#>
#> $mean_TMB
#> [1] 192
#>
# }