Compute Yule Q coefficient for all gene pairs
Usage
binary.yule(overlap, mat)
Arguments
- overlap
The pairwise overlap matrix
- mat
The binary GAM (features x samples)
Value
Matrix of Yule Q coefficients
Examples
am <- matrix(c(0,1,1,0,1,1), nrow = 2,
dimnames = list(c("geneA","geneB"), c("s1","s2","s3")))
ovlp <- am.pairwise.alteration.overlap(am)
binary.yule(ovlp, am)
#> geneA geneB
#> geneA NaN -1
#> geneB -1 NaN
