SELECT analysis on an AL with null model

Run SELECT analysis on input AL

select.on.AL(
  al,
  folder = "./",
  r.seed = 110,
  n.cores = 40,
  vetos = NULL,
  min.feature.support = 5,
  min.feature.freq = 0.001,
  remove.0.samples = TRUE,
  remove.unknown.class.samples = TRUE,
  rho = 0.1,
  lambda = 15,
  save.intermediate.files = TRUE,
  calculate_APC_threshold = TRUE,
  calculate_FDR = TRUE,
  verbose = TRUE
)

Arguments

al

Input AL with precalculated null model

Value

selection interactions between alterations

#@examples #select.on.AL()